Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq155400 107 2e-18 seq200298 96.9 3e-15 seq58964 93.3 4e-14 seq6123 86.0 5e-12 >seq155400 Length=901 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||||||||| || ||||| || || || || ||||| || | || ||| | Sbjct 691 AATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 632 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || || | ||||| || ||| || || || ||||||||| |||| || Sbjct 631 AGTGATAC-CATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCAGA 573 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| || ||||| || | ||| ||||| ||| | ||||||| || ||| | || ||||| Sbjct 572 TCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTA 513 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| ||||| ||| | || |||||||||| | | ||||||| Sbjct 512 CAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGGAA 460 >seq200298 Length=1237 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| |||||||| ||||| |||| ||| || || || || ||| Sbjct 725 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 666 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| | || |||||||| || ||||||||||| ||| | || | |||||| Sbjct 665 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 606 Query 115499 AGATTGCGAGGAGGAA 115514 || ||| | ||||||| Sbjct 605 AGGTTGAGGGGAGGAA 590 >seq58964 Length=436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || || ||||||||||| | ||| ||| | Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || ||| ||| || ||||||||| | ||| || || Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || || | || || | || || |||| ||||| || Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||| |||||||| ||| | ||| ||||| Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGTG 118 >seq6123 Length=1345 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| || |||||||| ||| | || ||| Sbjct 983 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 1042 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| ||| |||||||| || |||| || || Sbjct 1043 GACACCATTG-ACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCA 1101 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| || | ||| || || || | || |||| | ||| |||| ||||| || Sbjct 1102 GCAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAA 1161 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||| ||||| || | ||| | ||| Sbjct 1162 CATTCAAAAGGAGTCCACCCTTCATTTAGTG 1192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424251341773600