Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq136401 116 2e-21 seq171660 111 1e-19 seq59837 107 1e-18 seq58964 107 1e-18 seq117973 102 5e-17 seq115535 102 5e-17 seq155400 98.7 7e-16 seq150930 93.3 3e-14 seq6123 91.5 1e-13 seq192635 87.8 1e-12 seq1224 86.0 4e-12 seq153096 82.4 5e-11 seq520 82.4 5e-11 >seq136401 Length=1984 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1596 CTCTCTCTTCAAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTGTGCTATCGGTCTCGT 1655 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 1656 GGTCATATTTAGCCTTA 1672 >seq171660 Length=1062 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| |||||||| ||||||||| |||||||||| Sbjct 654 CATT-CCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAAT 596 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | || | || |||| ||||| |||||||| || || | || ||||| | Sbjct 595 CGGCAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTG 536 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||| || |||||| || ||| ||| ||||| | || ||||| ||| | Sbjct 535 GGGGTATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCT 476 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || ||||| || || || || || | || || || || ||||||||| Sbjct 475 CAACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCATG 423 >seq59837 Length=433 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| |||||| || || |||||||| | | Sbjct 333 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 274 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || ||||| ||||| || || | || || || | ||| Sbjct 273 AGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 214 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| || ||| ||||| | | || ||| ||||| ||| Sbjct 213 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACT 154 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 153 TCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 107 >seq58964 Length=436 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| ||| || ||||| |||||||| | | Sbjct 101 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 160 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| || | || ||||| ||||| || || | || || || | ||| Sbjct 161 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 220 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| ||| ||| || || | | || ||| ||||| ||| Sbjct 221 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACT 280 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 281 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 >seq117973 Length=1091 Score = 102 bits (112), Expect = 5e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||| || || ||| ||| ||||| |||||||||| Sbjct 935 CATT-CCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAAT 877 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| | || |||| ||||| |||||||| || || | || ||||| | Sbjct 876 CTGCGAGTGTACGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTG 817 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| || |||||| ||| ||| ||| ||||| | || || || || | Sbjct 816 GGGGGATGCCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCTCT 757 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || ||||| || || || || || | || || || || ||||||||| Sbjct 756 CAACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCATG 704 >seq115535 Length=1238 Score = 102 bits (112), Expect = 5e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||| | ||||| || ||||| |||||| || || ||||| || | Sbjct 597 TACCACCCCTGAGACGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 538 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| || | || |||||||| ||||| || | || || |||| | Sbjct 537 CCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAATATGAGCCTCTGCTGGTCGGGAG 478 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| || || ||| || || | || || || || || | Sbjct 477 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGA 418 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 | || | || ||||| || || || | |||||||||||| ||||||||| ||| Sbjct 417 CCTCGAGGGTGATAGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATGATTT 364 >seq155400 Length=901 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-- 38162 |||||||| |||||||| ||||||||| || |||||||| | ||| | |||| Sbjct 476 CAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCG-CAAGA---GTTCTGC 531 Query 38163 --TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 || || | ||| || || ||||| || || | |||||||| | |||| |||||||| Sbjct 532 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTT 591 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| || || || ||||| | || ||||| | || || || || | || | Sbjct 592 TGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGA 651 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || |||| ||||||||||| || ||||| || Sbjct 652 TGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATT 691 >seq150930 Length=8867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| ||| ||||| || || ||||| |||| Sbjct 1366 TACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 1307 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || ||| | || || | || ||||| ||||| || || | || || || | | Sbjct 1306 CCAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGTG 1247 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||| | || || ||| || || | Sbjct 1246 GGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCTGAGCTCTCCA 1187 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || |||||||| || || || |||||||| Sbjct 1186 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 1138 >seq6123 Length=1345 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||| |||||||| ||| |||||||||||| |||||||||| | Sbjct 1209 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 1150 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || || || | ||| Sbjct 1149 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 1090 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||| ||| ||| ||| |||||| || | | || || ||| ||||| Sbjct 1089 ATACCCTCTTTATCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACC 1030 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || || | || ||||| || || |||||| Sbjct 1029 TCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 982 >seq192635 Length=3999 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || ||||| |||||| || || ||||| || | | | || |||| || Sbjct 1862 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTC 1803 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||||||||||| || || ||||| || || || | |||| ||| || ||||| Sbjct 1802 GAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 1743 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||||||||| | || || || || || || || || || || || Sbjct 1742 AATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTT 1683 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| | |||||||||||| |||||||| || Sbjct 1682 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1650 >seq1224 Length=2434 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-TCGT 38166 ||||||||| || || |||||| || ||||||||||| | ||| | | | | || | Sbjct 1919 CACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAATCCG-CAAGAGTCCTGCCATCCT 1977 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | ||||| ||||| || || || | | || ||||| | |||| ||||| || ||| Sbjct 1978 CCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCT 2037 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 || || ||| || || | | ||||| || ||||| || | ||||| || | Sbjct 2038 GGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATGGTCT 2097 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || ||||||||||||||||| Sbjct 2098 TCCCTGTCAAAGTCTTCACGAATATCTGCAT 2128 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||||| ||||| ||| |||||| || ||||||||||||| Sbjct 1673 ACCACCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 1732 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || | || || || ||||| || | | || || || | || Sbjct 1733 CAGGGTACGACCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGG 1792 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| || ||| || || || ||||| | || ||||| ||| || || Sbjct 1793 GATACCTTCCTTATCCTGGATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCAC 1852 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || ||||| || ||||| || |||||||| Sbjct 1853 CTCCAAAGTGATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 1900 >seq153096 Length=4879 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||| || ||| |||||| || ||||||||||| | Sbjct 3216 TACCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGG 3157 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || || || || ||||| || || | | || || || | || Sbjct 3156 CCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGG 3097 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| || || ||| || || | || || || || || | Sbjct 3096 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 3037 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || || || || || | |||||||||||| || |||||| || Sbjct 3036 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATTTGCATGATT 2984 >seq520 Length=4969 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | ||| || |||| || | || |||||||| || Sbjct 2011 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 1952 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | |||| |||||| || || || || ||| ||||| Sbjct 1951 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTTTCTTGGATCTTGGCCTTGACATTG 1892 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || | || || || || | || || || || ||||| | |||||||||| Sbjct 1891 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 1832 Query 38307 AATATCTGCATGTTT 38321 ||||||||||| ||| Sbjct 1831 AATATCTGCATCTTT 1817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334086760418180