Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq195313 93.3 5e-14 seq12378 87.8 2e-12 seq189312 82.4 8e-11 seq173205 82.4 8e-11 >seq195313 Length=1390 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/98 (83%), Gaps = 7/98 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 743 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 686 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||| || ||||| |||||||| |||||||| Sbjct 685 GCGTGGGTTCAAATCCCACTTCTGACAAA-TATTATTG 649 >seq12378 Length=999 Score = 87.8 bits (96), Expect = 2e-12 Identities = 253/381 (66%), Gaps = 9/381 (2%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACG 92982 |||||||| || || || ||||||||| ||||| ||||| ||||| || | ||| || Sbjct 407 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 348 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || |||| |||||| | ||| || |||| || |||| || | || |||| Sbjct 347 CAC-GGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGA 289 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT-GTACATTAAGCACGCAAAGT 93101 | || | || | |||| || | || | ||| | | |||||| |||| Sbjct 288 CTTCACGCG-CTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGGCACGCGAAGT 230 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || || | ||||| ||||| || |||||||| || ||| || | ||| || | || Sbjct 229 CGCAGTGGAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCA 170 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCC 93220 || || || || ||||||||||| | ||| || || || || || || || |||||| Sbjct 169 ACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAGATCCCTTCC 111 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||| || || ||||| || || || |||||| | | || | | ||||||||| Sbjct 110 ACGCAGGCGAAGGCCACGATCCGCTCCGCAAAAGTCTCCGA---GCCGTCGATCCATTTC 54 Query 93281 AAAGCCCAATCGGCTTTTTTC 93301 | ||||| | || |||||| Sbjct 53 AGGGCCCACTGCGCCTTTTTC 33 >seq189312 Length=7513 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| |||| ||||||||||| |||||||| | ||| |||||| | || || | ||| Sbjct 5829 GTCAGGATGGCGGAGTGGTCTAACGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 5770 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| |||||| || ||||| Sbjct 5769 TGGGTTCAAATCCCACTTCTGACATTTTTTTATT 5736 >seq173205 Length=4535 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3244 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3187 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||| || |||||| ||| | ||| || || | ||||||| Sbjct 3186 GGGTTCAAATCCCACAGCTGTC-AATGTTTTTTTCATTTTTTGT 3144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555393611007200