Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq58964 96.9 2e-15 seq155400 93.3 3e-14 seq6123 89.7 4e-13 seq150930 86.0 4e-12 seq13283 84.2 2e-11 seq171660 82.4 5e-11 >seq58964 Length=436 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || || ||||||||||| ||||| |||| | | Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | ||| ||| ||| || ||||| || | || | |||| Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || |||||||| || || || || || || | || |||| |||||||| Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || || ||||| ||| |||| | ||| |||| || || Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 101 >seq155400 Length=901 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || | ||| | | ||||||||||| |||||||||||||| ||||| ||| Sbjct 595 GACAAAGAAGGCATCCCTCCAGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAA 536 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| | |||| | || |||||||| || || ||||| || |||||||| |||| || Sbjct 535 GATGGCAGAACTCTTGCGGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTT 477 >seq6123 Length=1345 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||| ||| |||| || | Sbjct 983 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 1042 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| ||| |||||||||||| | || | |||| Sbjct 1043 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 1102 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| || || || || ||| || |||| |||||||| Sbjct 1103 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 1162 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || |||||| | || | ||| |||| || || Sbjct 1163 ATTCAAAAGGAGTCCACCCTTCATTTAGTGCTTCGTCTACGTGGTGG 1209 >seq150930 Length=8867 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || ||||| ||| |||| ||| | || Sbjct 1138 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 1197 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || || || |||||| | || | |||| Sbjct 1198 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 1257 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || || ||| || |||| || ||||| Sbjct 1258 CAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCTGACTACAAC 1317 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || |||||| |||| | ||| | || || || Sbjct 1318 ATCCAGAAGGAATCCACCCTTCATTTGGTGCTTCGTCTTCGTGGTGG 1364 >seq13283 Length=967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| | ||| | |||| ||||| || || ||||| || ||||||||||| Sbjct 934 GACAAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATTTTTGCAGGGAAACAACTAGAG 875 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | ||| | || |||||||| || |||| |||||| |||||||| |||| || Sbjct 874 GATGGTCACACTCTTGCAGATTACAACATCCAGACGGAATCAACTCTTCACTTGGTGTTG 815 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 814 CGTCTTCGTGGTGG 801 >seq171660 Length=1062 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| |||| | | || ||||| || |||||||| |||||||| ||||| Sbjct 517 GACAAGGAGGGCATACCCCCAGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAG 576 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || | |||||||||||||| || ||||| ||||||||||| |||| | Sbjct 577 GATGGCCGCACCCTTGCCGATTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTGCTC 636 Query 22047 CGTTTACGAGGAGGA 22061 ||| | || || ||| Sbjct 637 CGTCTGCGTGGTGGA 651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357204819916120