Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12378 122 2e-22 >seq12378 Length=999 Score = 122 bits (134), Expect = 2e-22 Identities = 275/407 (68%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 42617 GGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA 42676 |||| | || || || || ||| || ||| |||||| | ||||| || || |||||||| Sbjct 6 GGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGA 65 Query 42677 GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT 42736 | | || || || | ||| || | || ||||| || ||| || || ||||| Sbjct 66 CGGCTCGGAG---ACTTTTGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTT 122 Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACT 42796 ||||||||| |||| | | || || ||||| || || | || |||||| || || Sbjct 123 CTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCT 182 Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 |||||||||||||| | ||| | || || ||||| || | ||||| || ||||| Sbjct 183 GACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGCTCCACTGCGACTTCGCGTGCCT 242 Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCAC 42916 || | ||| || |||| || |||| | | ||||||| || | | ||| | Sbjct 243 TCTCTACTC---CCTCCTCCGGATGAAGCTCACCGAGGAGCGCGTGAAGTCAATCGTGCG 299 Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC-TGCCCGTG-TCCCTGGTC 42974 | | || || || || |||| ||||||| || || | ||| | ||||| || | || Sbjct 300 GAACGCGGTTGACATAGAGAGGGAGTTCGTC-TGC-GACGCGTTACCGTGCGCCTTAGTT 357 Query 42975 GGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 || |||||| || || ||| | |||||||| ||| |||||| || Sbjct 358 GGGATGAACGGTGATCTGATGGGTCAGTACATCGAGTTCGTCGCTGA 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941851102292800