Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq58964 86.0 5e-12 seq155400 82.4 6e-11 >seq58964 Length=436 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTC-- 33967 || || ||||||| ||| || || ||| ||||||||||||||||||||| | |||| Sbjct 110 AGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC-AGTGTCCT 168 Query 33968 GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 || |||| || | ||||| || ||||| || || | |||||| || || | || | Sbjct 169 GC-CGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTT 227 Query 34028 CTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA-TTCGACC 34086 |||||||| ||| ||| ||| | | | | | || | || || || ||| | Sbjct 228 CTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTG-AGCTTTCCACTTCCAAA 286 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| ||||| | || |||||||| ||||||||| Sbjct 287 GTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 328 >seq155400 Length=901 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || |||||| ||||| || |||||| || ||||||||||| || Sbjct 462 CCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 521 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||||||| ||||| ||||| | ||| ||||| || Sbjct 522 AGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGG 581 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 582 ATGCCTTCTTTGTCC 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396042393845560