Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq12378 109 1e-18 >seq12378 Length=999 Score = 109 bits (120), Expect = 1e-18 Identities = 296/441 (67%), Gaps = 18/441 (4%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| ||||| |||| |||| | ||||| ||||| || | || || || || ||| Sbjct 79 TTTGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 138 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 ||||| || |||||||| || |||| | ||||||| || || | || || Sbjct 139 TGCGCGATATTTTGGCT----AAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAA 194 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAA 243463 |||||| ||| || || || || || ||| | |||| ||| ||| | || || Sbjct 195 CGAGTTGATCTCGCGAGATGAAGGGCTCCACTGCGACTTCGCGTGC-CTTCTCTACTCCC 253 Query 243464 AGCTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCACAGAA-GCAGTTG 243520 |||| || ||||| ||| | | || || || |||| | | ||| || |||| Sbjct 254 TCCTCCGGATGAAGCTCACCGA--GGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTG 310 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGGCATGAACTCT 243579 | | || | ||| ||| | |||||||| | || ||| | |||| |||| |||||| | Sbjct 311 ACATAGAGAGGGAGTTCGTCTGCGACGCGTTACCGTGC-GCCTTAGTTGGGATGAACGGT 369 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || ||||| ||||||||||| ||||| || || | | | ||| | || ||| Sbjct 370 GATCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATAT 429 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 | |||| |||| | ||||||| |||| | |||||||| ||| ||||| ||| Sbjct 430 GGGAAACTGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGG 489 Query 243700 AAAACTAACTTCTTCGAAAAG 243720 || || || ||||| || ||| Sbjct 490 AAGACCAATTTCTTTGAGAAG 510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099901541593000