Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq12378 129 7e-25 >seq12378 Length=999 Score = 129 bits (142), Expect = 7e-25 Identities = 345/519 (66%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 525 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 466 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC---ACCCCAATCTGTTTGAGGAG 125874 ||||||||||||||| | || | ||| | | ||||| | || || Sbjct 465 CCAATCAAATGGGTTCTGCACAT--CATACAGTTTCCCATATCCCAA-CGCACCCAGCAG 409 Query 125875 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 125934 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 408 CCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGC 349 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || || | |||||| ||| |||| || |||| || || || || | ||||||||| | Sbjct 348 GCACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGA 289 Query 125995 GTGAATGGTGTCCACCCC-AGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAAA 126051 | | | ||| | || | || | | | | | || || |||| | || Sbjct 288 CTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGAA 232 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || |||||| || || || || ||||| | || ||||||||| ||| || ||||| Sbjct 231 GTCGCAGTGGAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCAT 172 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | || ||||| || | ||| || ||||| || || |||||||||||||| || || Sbjct 171 CAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTC 112 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 ||| || ||||| || | || ||||| ||||| | ||| ||| | ||| || Sbjct 111 CACGCAGGCGAAGGCCACGATCCGCTCCGCAAAAGTCTCCGA---GCCGTCGATCCATTT 55 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 || |||||||||||||||||| ||| || |||| ||| Sbjct 54 CAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595779722602400