Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq186836 122 9e-23 seq6123 122 9e-23 seq115535 120 3e-22 seq192635 116 4e-21 seq13283 116 4e-21 seq7966 116 4e-21 seq150930 114 1e-20 seq153096 111 2e-19 seq58964 111 2e-19 seq1224 111 2e-19 seq115308 104 3e-17 seq59837 102 9e-17 seq171660 100 3e-16 seq117973 98.7 1e-15 >seq186836 Length=3669 Score = 122 bits (134), Expect = 9e-23 Identities = 147/196 (75%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || || ||||| |||| || |||||||| || || || Sbjct 725 CTCCTTCTGGATATTGTAGTCTGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 784 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||| ||||| | || | || |||||||||| ||| || ||||| ||| Sbjct 785 GATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGA-CGT 843 Query 42137 CGCC-ACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| || || |||| |||||||| ||||| ||||| |||| Sbjct 844 TGTCGATGGTGTCGGAGCTC---TCTACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTCT 900 Query 42193 TTACAAAGATTTGCAT 42208 |||||||||| ||||| Sbjct 901 TTACAAAGATCTGCAT 916 >seq6123 Length=1345 Score = 122 bits (134), Expect = 9e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | ||| ||||| | ||| |||||||||||| |||||||||||| Sbjct 1209 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 1150 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| || ||||||| ||||||||| | ||| Sbjct 1149 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 1090 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||| || ||| ||| | |||| | ||| | | | ||||| ||| || Sbjct 1089 ATACCCTCTTTATCC-TGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTC---TC 1034 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || |||||||| || || || ||||| |||||||||||||| Sbjct 1033 AACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 983 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||||||||| ||||| || || || | || || |||||||| ||||| || Sbjct 945 TCCTTTTGAATATTGTAGTCAGCAAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAA 886 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||| |||||||| | || | || ||||| || |||||| ||||| | Sbjct 885 ATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATTTTGGCTTTGACATTG 826 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| ||| ||| || || | |||||||| ||||| || || ||||| Sbjct 825 TCGATGGTGTCAGAGCT---TTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTA 769 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 768 ACGAAGATCTGCAT 755 >seq115535 Length=1238 Score = 120 bits (132), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | ||||| || | || |||||| || || ||||| || || Sbjct 596 ACCACCCCTGAGACGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 537 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||||| |||| || |||||||| || ||||||||||| | ||||||||||| || Sbjct 536 CAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAATATGAGCCTCTGCTGGTCGGGAGG 477 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || |||||||||| ||| || |||| ||| | | | ||||| |||| | Sbjct 476 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---T 421 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 420 CGACCTCGAGGGTGATAGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 369 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || |||||| || || |||||||||||||| || || | || || Sbjct 805 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGGGTACGACCATCCTCG 746 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || || || || | | ||||||||| | || | | ||||||||| | Sbjct 745 AGTTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 686 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 || || |||| ||| | | | || || |||| || || |||| ||||| || Sbjct 685 ATCTTGGCCTTGA-CGTTGTCGATGGTATCAGAGCTC---TCGACCTCGAGAGTGATCGT 630 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || || || ||||| ||||| Sbjct 629 CTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 597 >seq192635 Length=3999 Score = 116 bits (128), Expect = 4e-21 Identities = 149/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || |||||||| |||| || ||||| || || ||||| Sbjct 1844 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAA 1785 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||||| | ||| | || | || | Sbjct 1784 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGT-CTTGAATCTTGGCCTTCACAT 1726 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || ||||| || | |||||| || || |||||||| || || | Sbjct 1725 TGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCA 1666 Query 42196 CAAAGATTTGCATTTTCACGCCG 42218 | ||||| ||||| || |||||| Sbjct 1665 CGAAGATCTGCATCTTGACGCCG 1643 >seq13283 Length=967 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| ||| ||||||||||||||| || ||||| || |||| | Sbjct 584 ACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCC 643 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || | | ||||||||| | || | | |||||| Sbjct 644 ATCCTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTT 703 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 || | ||| |||| | ||| | | | | ||||| ||| |||||| || || Sbjct 704 GT-CTTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCT---TTCCACTTCCACAA 759 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||||| || || ||||| |||||||||||||| Sbjct 760 TGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | | || || |||||||| |||||||| Sbjct 382 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCACCCATCCTCGAGCTGCTTTCCAGCGAA 441 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 |||||| | || ||||| | || | | |||||||||| Sbjct 442 TATGAGCCTTTGTTGGTCCGAAGGGATG--CTCCTTGTCC 479 >seq7966 Length=1209 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| ||| ||||||||||||||| || || || || |||| | Sbjct 881 ACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCC 940 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||||||||| || || || | | ||||||||| | || | | |||||| Sbjct 941 ATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTT 1000 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 ||| ||| |||| | ||| | | | | ||||| ||| |||||| || | | Sbjct 1001 ATCC-TGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCT---TTCCACTTCCAAAG 1056 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||||| || || ||||| |||||||||||||| Sbjct 1057 TGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 1096 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | | || || |||||||| |||||||| Sbjct 677 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGCTTTCCAGCGAA 736 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 |||||| | ||||||||| | || | || |||||| ||| ||| | || | ||| | Sbjct 737 TATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCC-TGAATCTTGGCTTTCACAT 795 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||| || ||| || || || | || ||||| || || || || || | Sbjct 796 TGTCAATCGTATCTGAACTC---TCTACCTCCAATGTTATGGTCTTCCCTGTCAGAGTTT 852 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 853 TGACAAAGATCTGCAT 868 >seq150930 Length=8867 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | || |||||| || |||||||||||||| || ||||| | Sbjct 669 ACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCGGCC 610 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || ||||||||||| | || | | |||||| Sbjct 609 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTT 550 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | | | ||| | | | ||||| || ||||| || | |||| Sbjct 549 GTCC-TGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGA 491 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || || || || || |||||||| Sbjct 490 TAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 454 >seq153096 Length=4879 Score = 111 bits (122), Expect = 2e-19 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| |||||| || ||||||||||| |||| ||| || | Sbjct 3203 ACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCC 3144 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||||||| ||||| || | | ||||||||| | || | | |||||| Sbjct 3143 ATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTT 3084 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| || |||| ||| | | | ||||| |||| || || |||| | Sbjct 3083 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TCGACCTCGAGGG 3028 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| ||||| ||||| || || || || |||||||| Sbjct 3027 TGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATTTGCAT 2988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||||| || |||||| || ||||||||||| || ||||||| | || || Sbjct 3425 CACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTGCCATCCTC 3366 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | |||||||||||||| || | | |||||| || | ||| | | ||||| ||| Sbjct 3365 CAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTG 3306 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| || |||| | | | |||||| |||| || || |||| ||||| || Sbjct 3305 GATCTTGGCCTTGACGTTATCAATCGTGTCGGAGCTC---TCAACTTCGAGAGTGATTGT 3249 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| || ||||||||||| Sbjct 3248 CTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 3216 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| ||||| |||||||||||||| || || |||| || Sbjct 3652 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 3593 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | | |||||||| | ||| | | ||||| ||| | Sbjct 3592 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 3533 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || ||||| | | | || || |||| || || || | |||||||| Sbjct 3532 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTC---TCAACCTCCAAAGTGATGGTC 3476 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || | ||||| ||||| || ||||| Sbjct 3475 TTGCCTGTCAAAGTCTTCACAAAAATCTGCAT 3444 >seq58964 Length=436 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | ||||||||||| || ||| || ||||| |||||||| ||| Sbjct 101 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 160 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| |||| || |||||||| || || || ||||| | ||||||||| | || Sbjct 161 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 220 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || || |||||| ||| | |||| |||| | | | ||||| ||| ||| Sbjct 221 ATGCCTTCTTTGTCC-TGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCT---TTC 276 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || | || |||||||| || || | ||||| ||||| ||||||||| Sbjct 277 CACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 328 >seq1224 Length=2434 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || || | |||||| || | || |||||| || ||||||||||| || Sbjct 2129 ACCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGC 2188 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| |||| |||| || | ||||||||| ||||| || | || |||||| || | || Sbjct 2189 CAGGGTCCTGCCGTCCTCCAACTGCTTACCGGCGAAGATCAATCTCTGCTGATCCGGGGG 2248 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | |||||||||| ||| || |||| ||| | | | |||||| |||| | Sbjct 2249 AATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATCGTGTCGGAGCTC---T 2304 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| |||||||| || || || || ||||| || ||||| ||||| Sbjct 2305 CGACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 2356 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || ||||||||||||||||| || || | || || Sbjct 1692 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1751 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | | ||||||||| | ||| | | ||||| ||| | Sbjct 1752 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1811 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTT 42176 || || ||||| | | | || || ||| ||||| || | |||||||| Sbjct 1812 ATCTTGGCTTTGACATTATCGATGGTATC---CGAACTCTCCACCTCCAAAGTGATGGTC 1868 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | ||||| |||||||| ||||| Sbjct 1869 TTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 1900 >seq115308 Length=3903 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || ||||| || ||||| || | || || | |||||| || ||||| Sbjct 3599 CTCCTTCTGGATGTTATAATCTGCGAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 3658 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 3659 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3717 Query 42137 CGCC-ACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| ||||| |||| |||||||| ||||||||||| || | Sbjct 3718 TGTCGATGGTGTCGGAGCTC---TCCACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTTT 3774 Query 42193 TTACAAAGATTTGCAT 42208 | || || || ||||| Sbjct 3775 TCACGAATATCTGCAT 3790 >seq59837 Length=433 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | ||||||||||| || |||||| || || |||||||| ||| Sbjct 333 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 274 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || |||||||| || || || ||||| | ||||||||| | || Sbjct 273 AGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 214 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || || |||||| ||| | || | |||| | | | ||||| ||| ||| Sbjct 213 ATGCCTTCTTTGTCC-TGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCT---TTC 158 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || | || || ||||| || || | ||||| ||||||||||||||| Sbjct 157 CACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 106 >seq171660 Length=1062 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| || ||||||||||| ||||| || || ||||| | |||| || Sbjct 860 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 801 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||| ||||| || || ||||| | |||||| || | || | | |||||||||| | Sbjct 800 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 741 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | || ||| |||||| || | ||||| || || Sbjct 740 ATCTTCGCCTTGACATTGTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTCTTC 681 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || ||||||||||||||||| |||||| Sbjct 680 CCAGTAAGCGTCTTTACAAAGATCTGCATT 651 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 42026 AATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCG 42085 ||| ||||| || || ||||| | |||| || | ||| ||||| || || ||||| | Sbjct 1062 AATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCT 1003 Query 42086 CTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGT 42145 |||||| || | || | | |||||||||| ||||||| |||| | | | || Sbjct 1002 CTGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGT 943 Query 42146 GTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 42205 ||| |||||| || | ||||| || || || || ||||||||||||||||| || Sbjct 942 ATCGGAGCTTTCCACCTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTG 883 Query 42206 CATT 42209 |||| Sbjct 882 CATT 879 >seq117973 Length=1091 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| || | ||| ||| ||||| ||||||||||| || || || || | Sbjct 920 ACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGTGTACGGCC 861 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||||||| || || || || ||||| | |||||| || | || | || |||||| Sbjct 860 ATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTT 801 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| | |||| |||| | | | ||||| |||| || || || | | Sbjct 800 GTCC-TGAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCTC---TCAACCTCCAATG 745 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || || || ||||| |||||||| ||||| Sbjct 744 TGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541781570075200