Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq192635 118 1e-21 seq12378 109 5e-19 seq6123 100 3e-16 seq150930 93.3 4e-14 seq520 93.3 4e-14 seq165785 91.5 1e-13 seq171660 89.7 5e-13 seq153096 89.7 5e-13 seq115535 89.7 5e-13 seq155400 87.8 2e-12 >seq192635 Length=3999 Score = 118 bits (130), Expect = 1e-21 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||||||| ||||| |||| Sbjct 1846 GACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCG 1787 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| |||||||| || || || || ||||| ||| | || | || Sbjct 1786 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC-TTGAATCTTGGCCTTCAC 1728 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||||||||| | ||| | ||| || || || || |||| Sbjct 1727 ATTG-TCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTT 1669 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 1668 TCACGAAGATCTGCAT 1653 >seq12378 Length=999 Score = 109 bits (120), Expect = 5e-19 Identities = 161/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGC-AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCAC 52387 || ||||| ||| |||||||| |||||||| |||| |||||||| || | | | || Sbjct 22 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGA---CGGCTCGGAGAC 77 Query 52388 GCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTT 52447 | || ||||| || |||||||||||| || || || | || || || || ||||| Sbjct 78 TTTTGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTT 137 Query 52448 TGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGA 52507 ||| || |||| | |||| | || | ||||| || ||||| ||| ||||| Sbjct 138 CTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGA 197 Query 52508 GTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 |||||| ||||| || ||||| || ||| ||||| |||||||| Sbjct 198 GTTGATCTCGCGAGATGAAGGGCTCCACTGCGACTTCGCGTGCCT 242 >seq6123 Length=1345 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | |||||||| | | | |||||||||||||||||||| || Sbjct 1210 GCCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGC 1151 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || || | | |||| || | ||| ||||| || || Sbjct 1150 CAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGG 1091 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| ||||| || ||| | |||| || | ||| || | |||||| | ||| Sbjct 1090 GATACCCTCTTTATC-CTGAATCTTTGCCTTCACGTTG-TCAATGGTGTCAGAACTCTCA 1033 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | ||||| ||||| ||||| || ||||| || |||||| Sbjct 1032 ACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 982 >seq150930 Length=8867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | | |||||||| || || ||||| || Sbjct 680 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 621 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | | |||| |||||||| |||||||| || Sbjct 620 AGGGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 561 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | |||| |||| | | |||||| | ||||||| Sbjct 560 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTAACGTTGT-CAATGGTGTCAGAAGACTCCA 503 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || ||||| || ||||| ||||| Sbjct 502 CCTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | |||||| |||||||| || || |||| | Sbjct 1559 GACTCCTTCTGGATATTGTAGTCTGCGAGGGTACGCCCATCCTCGAGCTGCTTGCCGGCA 1500 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||| || || || || || ||||| ||| | || | || | Sbjct 1499 AAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCT-TGAATCTTGGCCTTCAC 1441 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||| | ||||||||| | || | || || || || ||||| | Sbjct 1440 ATTGT-CAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCT 1382 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 1381 TGACAAAAATCTGCAT 1366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | || ||||| || ||||||||||| | Sbjct 1364 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 1305 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || || | | |||| || | ||| ||||| || || Sbjct 1304 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 1245 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||| | |||||| Sbjct 1244 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTG-TCGATGGTGTCTGAGCTCTCCAC 1186 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || || ||||| |||||||| Sbjct 1185 CTCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 1138 >seq520 Length=4969 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 138425 CCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || |||||||||||| || || || ||||||||| || || |||| || Sbjct 2011 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 1952 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTG 138542 || |||||||| || || ||||| || ||||| || || ||| || || | |||| Sbjct 1951 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTTTCTTGGATCTTGGCCTTGACATTG 1892 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 | | | ||||||| | ||||||||||| || | || || || || || ||||| || Sbjct 1891 T-CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCAC 1833 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 1832 GAATATCTGCAT 1821 >seq165785 Length=1301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | || || ||||||||| || || |||| | Sbjct 1224 GACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCA 1165 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | |||||| || ||||| || || || ||||| ||| || ||| | Sbjct 1164 AAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACG 1105 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| || | || || || || || || || Sbjct 1104 TTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTCTTC 1045 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 1044 ACAAAGATCTGCATG 1030 >seq171660 Length=1062 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| || || | | |||| |||||||||||||||||||| Sbjct 878 CCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCA 819 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| || | ||| || || || || Sbjct 818 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGA 759 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | || |||| ||||| Sbjct 758 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTG-TCAATTGTATCGGAGCTTTCCAC 700 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || |||||||| |||||||| Sbjct 699 CTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 652 >seq153096 Length=4879 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | |||||||| ||||||||||| || | Sbjct 3670 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 3611 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| | | || |||||||| || Sbjct 3610 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGG 3551 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || ||| | | || | ||| || | ||| ||| Sbjct 3550 ATCCCTTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACC 3491 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||| || |||||||||||||| Sbjct 3490 TCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCAT 3444 >seq115535 Length=1238 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||| || |||||||| || | Sbjct 823 CCACCCCGGAGACGGAGGACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCC 764 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||||| || || | | |||| | | ||| ||||||||||| Sbjct 763 AGGGTACGACCATCCTCGAGTTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGAGGG 704 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | ||| || | ||| ||| Sbjct 703 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCAGAGCTCTCGACC 644 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||| || || || || ||||| || || |||||||| Sbjct 643 TCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||| || || |||| Sbjct 562 GACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCG 503 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | ||| ||||| ||||| || || || ||||| ||| || || | Sbjct 502 AATATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 443 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||| ||||||| || | || || || || || ||||| Sbjct 442 TTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCGGTTAGGGTTTTC 383 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 382 ACGAAGATCTGCATG 368 >seq155400 Length=901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||||||||| |||||||| || | ||| | || | || || ||||| || || | Sbjct 495 GACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCA-TCTTCCAGTTGCTTGCCAGC 553 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| || | |||||| || ||||| || ||||||||||| ||| || ||| | Sbjct 554 AAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGAC 613 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||| ||||| | || | || || || |||||||||| Sbjct 614 ATTG-TCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGTCTTCCCGGTCAGAGTTT 672 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||| ||||| Sbjct 673 TCACGAAAATTTGCAT 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494954872641600