Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq155400 114 9e-21 seq7966 107 1e-18 seq153096 87.8 1e-12 seq58964 84.2 2e-11 seq2159 84.2 2e-11 >seq155400 Length=901 Score = 114 bits (126), Expect = 9e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| ||||||||||| ||| |||| | ||||| | ||| Sbjct 486 TGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCATCTTCCAGTTGC 545 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | |||||| || || || ||||| ||||| || ||| Sbjct 546 TTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTG 605 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| || | || || || | || ||||| || || ||| Sbjct 606 GCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGTCTTCCCGGTC 665 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| || |||||||||||||| Sbjct 666 AGAGTTTTCACGAAAATTTGCATATT 691 >seq7966 Length=1209 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| ||| | ||| | || || | || Sbjct 666 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 725 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| |||| | | ||| ||||| || || || ||||| || ||| ||| Sbjct 726 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 785 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| | | ||||| || || || ||||| || |||||| Sbjct 786 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTGTC 845 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 |||||||| ||||| || |||||| Sbjct 846 AGAGTTTTGACAAAGATCTGCATA 869 >seq153096 Length=4879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || || || || ||||||||| | | ||| | || || Sbjct 3196 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTCC 3137 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || || ||| | ||||| | ||| ||||| |||||||| |||||||| Sbjct 3136 AACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 3077 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || ||| | || || || | ||| ||||| || Sbjct 3076 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTG 3017 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAATAAATTT 15191 || || || ||||| || ||||||||||| ||| | | | ||||| Sbjct 3016 CCGGTTAGGGTTTTCACGAAAATTTGCATGATTGGGATTGAATTT 2972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| || | | |||| || Sbjct 3652 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 3593 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||| | || ||||| ||| || |||||||| || Sbjct 3592 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 3533 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || ||||| | || || || || || ||||| || Sbjct 3532 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 3473 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || |||||||| ||||| Sbjct 3472 CCTGTCAAAGTCTTCACAAAAATCTGCAT 3444 >seq58964 Length=436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || ||||| || ||||||||||| || | || |||| || Sbjct 119 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 178 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | || | | ||| ||||| ||||| ||||| ||||| | Sbjct 179 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 238 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || || | || || || || |||| || || || ||||||||||| Sbjct 239 ATCTTTGCCTTG-ACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 297 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || |||||||||||||| Sbjct 298 CCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 >seq2159 Length=1969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| |||||||||| ||||| || || || ||||| ||||||||||| Sbjct 1405 CCACCCCTCAACCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGCA 1464 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| ||||| || || || | ||||| | |||||| || || Sbjct 1465 AGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGGG 1524 Query 15070 ATTCCTTCCTTGTC 15083 || |||||||| || Sbjct 1525 ATGCCTTCCTTATC 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356473902392300