Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq153096 122 8e-23 seq186836 113 4e-20 seq155400 107 2e-18 seq6123 105 6e-18 seq7966 100 3e-16 seq192635 96.9 3e-15 seq150930 93.3 4e-14 seq115535 93.3 4e-14 seq200298 89.7 5e-13 seq59837 89.7 5e-13 seq58964 87.8 2e-12 seq13283 87.8 2e-12 >seq153096 Length=4879 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||| || || || ||||| |||||||| |||||| Sbjct 3217 ATACCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCG 3158 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | ||||| | ||||||||||| Sbjct 3157 GCCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGG 3098 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | ||||||||| ||| Sbjct 3097 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 3039 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || ||||||||||| ||||| || ||||||||||| Sbjct 3038 GACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATTTGCAT 2988 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| | |||||| || || ||||| |||||||| ||||| Sbjct 3445 ATCCCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCC 3386 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| || || ||| | ||||| | ||||| ||||| Sbjct 3385 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGT 3326 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||| || || || |||| || | || | |||||||| ||| Sbjct 3325 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTATCAATCGTGTCGGAGCTCTC 3267 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | || || ||||| ||||| || || || |||||||| Sbjct 3266 AACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 3216 >seq186836 Length=3669 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || || || ||||| || || || || ||||||||||||||| Sbjct 462 CCACCACGGAGACGCAGAACAAGGTGCAGGGTGGACTCTTTCTGGATATTATAATCGGCC 521 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || ||||| ||| | ||||| | |||||| |||||||| Sbjct 522 AAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGG 581 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||||||||| || ||||| || | ||| || || ||| || Sbjct 582 ATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCTACC 641 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || | ||| || ||||||| ||||| Sbjct 642 TCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAACCTGCAT 688 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| || || || || || ||||| |||||||| || || Sbjct 687 ATGCCACCACGAAGCCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCT 746 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || ||||| || | || | | || ||||| || Sbjct 747 GCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGGTCTGGA 806 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || ||||| || | || | ||||||||| ||| Sbjct 807 GGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 865 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||||||||| || |||||||| || ||||| Sbjct 866 TACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTCTTTACAAAGATCTGCAT 916 >seq155400 Length=901 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||||||| || || || || || ||||||||||| || ||||| Sbjct 460 TTCCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCG 519 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| | ||| |||| ||| || || || | |||| || || || || || | Sbjct 520 CAAGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAG 579 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||||||||| || || || || ||||| || | ||| || ||||| Sbjct 580 GGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGA 639 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | ||| | || || ||||| |||||||| || ||||||||||| Sbjct 640 CCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCAT 688 >seq6123 Length=1345 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| || | ||| || || || || ||||||||||| ||||| || || Sbjct 984 ATGCCACCGCGGAGTCTGAGCACCAGGTGTAGAGTCGATTCCTTTTGAATATTGTAGTCA 925 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| || | |||| || ||||||||| || Sbjct 924 GCAAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGG 865 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| |||||||| ||||| ||||| || | |||||| || || Sbjct 864 GGAATGCCTTCCTTATCTTGGATTTTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCA 805 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || ||||| || || || || |||||| Sbjct 804 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATC 754 >seq7966 Length=1209 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||||| || || |||||||| |||||||| || Sbjct 867 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 926 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || ||||| | ||||| | |||||||| || Sbjct 927 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 986 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| |||||||| ||| | |||| |||||| || || Sbjct 987 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCC 1046 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||||||||| || || || ||||| |||||||| Sbjct 1047 ACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 1096 >seq192635 Length=3999 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 1879 CCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 1820 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | |||||||| ||| | || | || |||||||||||||| Sbjct 1819 AGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 1760 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || |||||||| || || | || | ||||||||| ||||| || Sbjct 1759 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACC 1700 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | || | ||| || || ||||| ||||| || || || |||||| Sbjct 1699 TCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 1652 >seq150930 Length=8867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || || ||||| |||||||| ||||| | ||| ||| || Sbjct 663 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCGGCCATCCTC 604 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | |||| || ||||||||||| || || || || || || || Sbjct 603 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTG 544 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || || | || | || | |||||| |||||||| || || || || | || | Sbjct 543 AATCTTGGCCTTAA-CGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCT 485 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 ||||||| || ||||| || |||||||||||| ||||| || Sbjct 484 TGCCGGTGAGGGTTTTCACGAAAATTTGCATC-TGCGACAAA 444 >seq115535 Length=1238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || | ||||| || || ||||| ||||| || ||||| Sbjct 823 CCACCCCGGAGACGGAGGACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCC 764 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | ||| || ||||| | ||||| | ||||||||||| || Sbjct 763 AGGGTACGACCATCCTCGAGTTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGAGGG 704 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || || || || || |||| || | || | ||| || || |||||| Sbjct 703 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCAGAGCTCTCGAC 645 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | ||| || |||||||| ||||| || || || ||||| Sbjct 644 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 597 >seq200298 Length=1237 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 || ||||||| | | ||||||||| || || || ||||| || |||||||||||||||| Sbjct 587 TTGTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAAT 646 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | |||| | ||| ||||| || || || || | |||| || ||||| || | Sbjct 647 CTGCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTG 706 Query 45229 GCGGAATGCCTTCTTTATCTTGAA 45252 | || |||||||| || || |||| Sbjct 707 GAGGGATGCCTTCCTTGTCCTGAA 730 >seq59837 Length=433 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTT--TAGAATCG 45188 ||| | |||||| ||||| ||||| || || || ||||| || | || | || ||| Sbjct 316 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC--TGCCAGTGTCCTACCATCC 259 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | || |||||||| | || | | |||||||| || |||||||||||||| || Sbjct 258 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 199 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 ||||| || |||| || | ||||| || || ||||| | ||||| ||| Sbjct 198 TGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 139 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || ||||| |||||||| Sbjct 138 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 107 >seq58964 Length=436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTT--TAGAATCG 45188 ||| | |||||| || || || || || || || ||||| || | || | | || Sbjct 118 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATC--TGCCAGTGTCCTGCCGTCC 175 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | || |||||||| | || | | |||||||| || |||||||||||||| || Sbjct 176 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 235 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||| ||| |||| || | || | ||||| || || ||||| | ||||| || Sbjct 236 TGAATCTTTGCCTTGA-CGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGT 294 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | ||| || |||||||||||||| Sbjct 295 TTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 >seq13283 Length=967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || |||||||| |||||||| || | || | ||| || | || Sbjct 597 TGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCCATCCTCAAGCTGC 656 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||| | |||||||| || ||||| || || || ||||||||||| Sbjct 657 TTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATTTTA 716 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || || ||||| | | | | ||||||||||| Sbjct 717 GCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCACAATGATGGTTTTGCCGGTA 776 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 777 AGGGTCTTGACAAAGATTTGCAT 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450812284568800