Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12378 114 2e-20 >seq12378 Length=999 Score = 114 bits (126), Expect = 2e-20 Identities = 343/521 (66%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || | |||||| ||||| || |||||||| | || || || |||||| Sbjct 525 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 466 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC---ACCCCAATCTGTTTGAGGAG 127347 ||||||||||||||| | || | ||| | | ||||| | || || Sbjct 465 CCAATCAAATGGGTTCTGCACAT--CATACAGTTTCCCATATCCCAA-CGCACCCAGCAG 409 Query 127348 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 127407 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 408 CCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGC 349 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || || | |||||| ||| |||| || |||| ||||| || || | ||| ||||| | Sbjct 348 GCACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGA 289 Query 127468 GTGAATAGTGTCCACCCC-AGGTCTATT--GCGTAAAGTCTTGAAGAGTTCCACAGCAAA 127524 | | ||| | || | || | | | | | || || ||| || || Sbjct 288 CTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CAC-GCGAA 232 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || |||||| || || || || ||||| | || ||||||||| |||||| ||||| Sbjct 231 GTCGCAGTGGAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCAT 172 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | || ||||| || | ||| || ||||| || || || |||||||||||||| || Sbjct 171 CAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTC 112 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGG--AGCGGGACTTTGTATCAAACCAC 127702 ||| || ||||| || | | ||||| ||||| | || | | || | ||| Sbjct 111 CACGCAGGCGAAGGCCACGATCCGCTCCGCAAAAGTCTCCGAGCC-----GTCGATCCAT 57 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 |||| |||||||| ||||||||| ||| || |||| ||| Sbjct 56 TTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611890761904800