Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12378 134 2e-26 >seq12378 Length=999 Score = 134 bits (148), Expect = 2e-26 Identities = 346/515 (67%), Gaps = 14/515 (3%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGG 159706 ||||||| || || |||||||| |||| | | || | | ||||| | | |||||| Sbjct 511 TCTTCTCAAAGAAATTGGTCTTCCCCTGAA-GACTAATCAGCTCCATCCAATCAAATGGG 453 Query 159707 TTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 |||| ||| | ||| | ||| | |||| | || |||||| ||| || || || || Sbjct 452 TTCTGCACATCATACAGTTTCCCATATCCCAACGCACCCAGCAGCCTATCAGCGACGAAC 393 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825 |||||||| || |||| | |||| ||| ||||| | | | | |||| | ||| || Sbjct 392 TCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCGCACGGTAA-CGCGTC 334 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGT 159884 | | |||||| |||| || || ||||| ||| | ||| || | || || || | Sbjct 333 GCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCG-CACGATTGACTTCACGCGCTCCT 275 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| | | | || | | || |||||||| ||||||||||| || | Sbjct 274 CGGTGAGCTTCATCCGGAGGAGGGAGT---AGAGAAGGCACGCGAAGTCGCAGTGGAGCC 218 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || || ||||| |||||||| || | | | || |||||||| | ||| ||| || Sbjct 217 CTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTTTT 158 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || | |||| |||| | | | || |||||||| |||||| || || Sbjct 157 TTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAG 99 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 ||||||| || ||| ||||| | | | | | | | |||| | |||||| | Sbjct 98 GCCACGATCCGCTCCGCAAAA---GTCTCCGAGCCGTCGATCCATTTCAGGGCCCACTGC 42 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGC 160158 ||||| || |||| ||| || ||| |||||||| Sbjct 41 GCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793060164836800