Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq59837 100 2e-16 seq58964 95.1 8e-15 seq171660 82.4 5e-11 seq153096 82.4 5e-11 >seq59837 Length=433 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || |||||||||| ||| || || ||||| || |||| Sbjct 337 CATC-CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAAT 279 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | |||| || | || || || |||| || | | |||||| || | Sbjct 278 CTGCCAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTG 219 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | |||||||||||| || || || | | | | |||||||| ||||| Sbjct 218 GGGGAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTT 159 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| ||||| || || ||||| || || ||||| ||||| Sbjct 158 CCACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 107 >seq58964 Length=436 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || |||||||||| ||| ||||| || || || |||| Sbjct 97 CATC-CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAAT 155 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | | || || | || || || |||| || | | |||||| || | Sbjct 156 CTGCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTG 215 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | |||||||||||| || ||| || | | | | |||||||| ||||| Sbjct 216 GGGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTT 275 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| ||||| || || ||||| || || || || ||||| Sbjct 276 CCACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 >seq171660 Length=1062 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| || | ||| || ||||| ||||| |||||||| Sbjct 650 CCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCA 591 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| |||| || | | ||||||||| | |||| Sbjct 590 AGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGT 531 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| || ||| || | | | | ||| || | || || || Sbjct 530 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACC 471 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || || || || || | ||| || || |||||||||||| Sbjct 470 TCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCATG 423 >seq153096 Length=4879 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| || || || ||||| ||||||||| Sbjct 3214 CCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCC 3155 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||| || || ||| | || || || | |||||| |||| ||| Sbjct 3154 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 3095 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || || | ||| | | | ||||| | ||| || || Sbjct 3094 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGAC 3036 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || || || || |||| ||||| ||||| || |||||| Sbjct 3035 CTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATTTGCATG 2987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346477248747740