Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq127040 125 9e-24 seq12378 98.7 1e-15 seq159780 93.3 5e-14 >seq127040 Length=3218 Score = 125 bits (138), Expect = 9e-24 Identities = 311/465 (67%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || ||||| | | || ||||| || | |||| ||||| || |||| || Sbjct 784 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGT---GTTACCCTC 840 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| |||||||||||||| |||| || ||||| | ||||||||| || Sbjct 841 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT-- 898 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | ||| ||| || |||||||| ||||||| || || || Sbjct 899 -CCACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 957 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| ||| ||||| ||| |||| ||| ||||| || || || || || ||| Sbjct 958 GCAAGGTGCGTTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACA 1015 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 ||||||||||| || ||||| | | | | | || | || || || ||| || ||| Sbjct 1016 CCAACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTC 1074 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| ||||| || || || |||||||| || || ||||| || | || || | Sbjct 1075 ACCAGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAAC 1134 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||| || ||| || | |||||||||| | ||| | || ||||| Sbjct 1135 CCCTTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCAC 1194 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | || | || || | ||||| | || | ||| ||||||| Sbjct 1195 CACTTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 1239 >seq12378 Length=999 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||| ||||| || | || || || || || || || ||||||||||| || |||| Sbjct 79 TTTGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 138 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || | ||||| ||||| |||||| |||||| Sbjct 139 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 198 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || || || || |||||| Sbjct 199 TTGATCTCGCGAGATGAAGGGCTCCAC 225 >seq159780 Length=2554 Score = 93.3 bits (102), Expect = 5e-14 Identities = 191/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| || |||||||| ||||| | ||| |||||||| || |||| |||||||| | Sbjct 325 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 268 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | ||| | || || ||||||||||||||||| || || ||| Sbjct 267 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 208 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| || || ||||| | |||| || | | || ||||| | Sbjct 207 CAGGG--CGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 150 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| ||||||||| | | |||| ||| || ||| || || |||| Sbjct 149 CCACAAACAGCTCCACAAACTCCGACGCGGCACACGAGAAGAACGGCGTGCCAGCCTCAC 90 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || | ||| || || || || ||||| || ||||| || Sbjct 89 CAGCCACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGG 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619106898961600