Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq127040 111 2e-19 seq12378 84.2 3e-11 >seq127040 Length=3218 Score = 111 bits (122), Expect = 2e-19 Identities = 229/337 (68%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || ||||| | | || || || || | |||| ||||| || | | ||||| Sbjct 784 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 843 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| || |||| || ||||| | ||||||||| || Sbjct 844 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 900 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | ||| ||| || |||||||| ||||||| || ||||| || Sbjct 901 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 960 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||||| || | | ||| ||||| || || | || || |||||||| Sbjct 961 AGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 1020 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | | | | | || | || || || ||| || |||||| | Sbjct 1021 AAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACCAG 1079 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || || || |||||||| || || ||||| Sbjct 1080 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 1116 >seq12378 Length=999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || |||||||| || || | || || |||||| || || ||||| | || Sbjct 225 GTGGAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCC 166 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || |||||||| || ||||||||||| || ||||| || Sbjct 165 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCA 106 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 || || || | | ||||| || || | |||| | ||| | |||||||| Sbjct 105 GGCGAAGGCCACGATCCGCTCCGCAAAAGTCTCCGAGCC-----GTCGATCCATTTCAGG 51 Query 117463 GCCCATTTCGCCTTCTTC 117480 ||||| | |||||| ||| Sbjct 50 GCCCACTGCGCCTTTTTC 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588426348087200