Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq124361 118 1e-21 >seq124361 Length=2041 Score = 118 bits (130), Expect = 1e-21 Identities = 175/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||||| ||| ||||||| || ||| ||| ||||||||| | || ||||| Sbjct 221 GGTGAGTTGGGGGCGGATATTGTGGTGGGTTCCGCGCAGAGGTTTGGTGTGCCGATGGGG 280 Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851 ||||||||||||||||| |||||| | || ||| | | |||| ||||| | ||| ||| Sbjct 281 TATGGAGGTCCTCATGCAGCATTCCTGGCCACATCTCAGGAGTACAAGAGGATGATGCCT 340 Query 153852 GGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909 || |||||| | | || ||| || ||| | || || ||| | | || Sbjct 341 GGAAGAATTATTGGTGTAAGT--GTTGATTCTTCGGGGAAGCCTGCACTGCGTATGGCCA 398 Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 | ||||| || ||||| |||||||| || ||||| || ||||| ||||| ||||| |||| Sbjct 399 TGCAGACAAGGGAGCAACATATCAGAAGGGACAAGGCTACCAGCAACATTTGCACTGCTC 458 Query 153970 AGGCAC 153975 ||| || Sbjct 459 AGGTAC 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577686719075200