Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq124361 100 3e-16 seq29799 95.1 1e-14 >seq124361 Length=2041 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 158442 GCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 158501 ||| ||||||||| | || ||||| || |||||||||||||| |||||| | || ||| | Sbjct 256 GCAGAGGTTTGGTGTGCCGATGGGGTATGGAGGTCCTCATGCAGCATTCCTGGCCACATC 315 Query 158502 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAA 158559 | |||| ||||| | ||| ||||| |||||| | | || ||| || ||| Sbjct 316 TCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGTGTAAGT--GTTGATTCTTCG 373 Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || || ||| | | || | ||||| || ||||| ||||||||||| ||||| Sbjct 374 GGGAAGCCTGCACTGCGTATGGCCATGCAGACAAGGGAGCAACATATCAGAAGGGACAAG 433 Query 158620 GCAACCAGTAACATCTGCACAGCACA 158645 || ||||| ||||| ||||| || || Sbjct 434 GCTACCAGCAACATTTGCACTGCTCA 459 >seq29799 Length=644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| ||| | ||||||||||| || |||||||| ||||| || Sbjct 552 TGGAGCTGATGTCTGCCATCTCAACCTCCATAAGACATTTTGCATTCCACACGGAGGCGG 611 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | |||||||||||||| Sbjct 612 TGGTCCTGGCATGGGTCCTATTGGTGT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586501832100800