Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq153096 107 1e-18 seq171660 100 2e-16 seq117973 100 2e-16 seq1224 100 2e-16 seq200298 98.7 8e-16 seq192635 96.9 3e-15 seq150930 93.3 3e-14 seq186836 87.8 1e-12 >seq153096 Length=4879 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| ||||| | || || | ||||| || || ||| ||| || ||||| |||||||| Sbjct 3674 GTCACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATC 3615 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG- 48654 || || | ||| |||| || | |||||| |||||||| |||| | || || |||| Sbjct 3614 AGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGG 3555 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 ||||| | || ||||| || ||||| ||| ||| | | | | || || || Sbjct 3554 TGGGATC-CCTTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCT 3496 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | ||||||| || || || || || |||||||| || ||||||||||||||| Sbjct 3495 CAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCATC 3443 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || ||||||||||| | | | |||| Sbjct 3205 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGG 3146 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||||||||| || |||| | ||| || |||| ||||| |||||| Sbjct 3145 CCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCC 3086 Query 48669 TTGTC 48673 ||||| Sbjct 3085 TTGTC 3081 >seq171660 Length=1062 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||||||| || ||||| |||| || | || |||| || Sbjct 404 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCGTCCTCA 345 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| | ||||| |||| ||||| ||||||||||| Sbjct 344 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 285 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | || || || || ||||| | || || || || Sbjct 284 ATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTG 225 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||| ||||| ||||||||| Sbjct 224 CCTGTGAGGGTTTTCACAAAGATCTGCATC 195 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| ||||| ||||||||||| | || | || Sbjct 641 AGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGG 582 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || |||||||| || || | ||| ||||| | ||| | ||||||| Sbjct 581 CCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCC 522 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | | || || ||| ||||||| || Sbjct 521 TTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCTCCAATGTG 462 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 461 ATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCAT 424 >seq117973 Length=1091 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||||||||| ||||||||||| | || | || Sbjct 922 AGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGTGTACGG 863 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || |||||||| || || | ||| ||||| | ||| | ||||||| Sbjct 862 CCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCC 803 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | | || || ||| ||||||| || Sbjct 802 TTGTCCTGAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCTCTCAACCTCCAATGTG 743 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 742 ATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| || || ||| |||||||||||| ||||| |||| || |||| |||| || Sbjct 686 CACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTTCGGCCGTCCTC 627 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || ||||| ||||| | || || || | ||| | ||||||||||| Sbjct 626 GAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 567 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| || ||| | | || || || || ||||| | || || || || Sbjct 566 GATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTT 507 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||| ||||| ||||||||| Sbjct 506 GCCTGTGAGGGTTTTCACAAAGATCTGCATC 476 >seq1224 Length=2434 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || ||||||||||||| || | ||| | || || Sbjct 1692 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1751 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| |||| | ||| || |||| || | || ||||| || Sbjct 1752 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1811 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | | || || ||||||||||| || || || ||| Sbjct 1812 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 1871 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||||||| || ||||| ||||||||| Sbjct 1872 CCTGTCAAAGTCTTCACAAAGATCTGCATC 1901 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||| || || || ||| || || ||||||||||| | Sbjct 2130 CCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCC 2189 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | |||| ||||||||||||||||| || |||| || ||| ||||||| |||| Sbjct 2190 AGGGTCCTGCCGTCCTCCAACTGCTTACCGGCGAAGATCAATCTCTGCTGATCCGGGGGA 2249 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 2250 ATTCCCTCCTTGTC 2263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||||||| || || ||| || || ||||||||||| | ||| | | Sbjct 1911 AGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTG 1970 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTC 48667 | || ||||| ||||| || || || |||| | ||| |||||| |||||| | || || Sbjct 1971 CCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATC-CCTTC 2029 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || ||||| || || | | | | || || ||| ||||||| || Sbjct 2030 CTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGT 2089 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || |||||||| Sbjct 2090 AATGGTCTTCCCTGTCAAAGTCTTCACGAATATCTGCAT 2128 >seq200298 Length=1237 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || |||||| | || || || ||||||||| ||||| ||||| | Sbjct 592 CCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTGCA 651 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || |||||||||||||| ||||| ||||||| ||| ||||| | || Sbjct 652 AGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAGGG 711 Query 48660 ACGCCCTCCTTGTC 48673 | ||| |||||||| Sbjct 712 ATGCCTTCCTTGTC 725 >seq192635 Length=3999 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || || ||||| || | Sbjct 1881 CGCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 1822 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| | || |||| || | ||| || ||||| || || || ||||| || |||| | Sbjct 1821 CGAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 1762 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| |||||| || ||| | | | || || | ||||| Sbjct 1761 GGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCA 1702 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| ||||| || ||||| | ||||| || || ||||||||| || Sbjct 1701 CCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 1649 >seq150930 Length=8867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || ||||||||||||| || | || Sbjct 671 AGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCGG 612 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || |||| ||| | |||||| Sbjct 611 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCC 552 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||||||||| | || Sbjct 551 TTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTG 492 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | ||||| || ||||| |||||| Sbjct 491 ATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATC 453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || || || || |||||||| | || | || Sbjct 1127 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGG 1068 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| || || | ||| || || | || | |||||| Sbjct 1067 CCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCC 1008 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||||||||| | || Sbjct 1007 TTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTG 948 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || || || |||||||| Sbjct 947 ATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 910 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || || || || ||||| |||| || | || Sbjct 1355 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGG 1296 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | ||| || || | || | |||||| Sbjct 1295 CCATCCTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCC 1236 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| ||||||||||| || Sbjct 1235 TTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTG 1176 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| |||||||| Sbjct 1175 ATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 1138 >seq186836 Length=3669 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || ||||| ||||| | | | | ||| | || ||||||||| Sbjct 486 TGCAGGGTGGACTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGC 545 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| | || ||||||| || | |||||||| || |||||| Sbjct 546 TTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTG 605 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | || || ||| ||||| | || || || || || ||| Sbjct 606 GCTTTGACATTGTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCCAGTC 665 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||||| |||||| Sbjct 666 AAAGTCTTCACAAAAACCTGCAT 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379959016541940