Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12378 107 4e-18 >seq12378 Length=999 Score = 107 bits (118), Expect = 4e-18 Identities = 353/540 (65%), Gaps = 18/540 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA-ACGAGATGTTCT 47897 |||||| ||||| ||||| ||||||||||| || |||||||||| | || | || || Sbjct 528 CTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTA-ATCAGCT 470 Query 47898 CCATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCC 47953 |||| | || ||||| | | ||||| ||| | || ||| | || Sbjct 469 CCATCCAATCAAATGGGTTCTGCACATCATACAGTTTCCCATATC----CCAACGCACCC 414 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-T 48012 ||||| ||| |||||| |||||||||| | ||| || |||||| || | | Sbjct 413 AGCAGCCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACT 354 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||||| || || | || |||||| ||||||| | || || | || ||| Sbjct 353 AAGGCGCACGGT-AACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCAC 295 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| ||||| ||| | | | || | || ||| | || ||||| | ||| Sbjct 294 GATTGACTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAG---GGAGTAGAGAAGGCA 238 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| | ||| | ||||| || || ||| | | |||| |||||| ||||| Sbjct 237 CGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACC 178 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | ||| | || ||| ||||| || || || ||| || ||||||||||| Sbjct 177 CGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGAT 118 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 || ||||| ||||| || || | | ||||| || ||| | | | | ||| Sbjct 117 CCCTTCCACGCAGGCGAAGGCCACGATC--CGCTCCGCAA-AAGTCTCCGAGCCGTCGAT 61 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||| | ||||| ||| || ||| || || || || | ||||||||| Sbjct 60 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929078443955200