Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq155400 98.7 8e-16 seq171660 95.1 1e-14 seq58964 93.3 4e-14 seq115308 84.2 2e-11 seq2159 84.2 2e-11 seq194486 82.4 6e-11 >seq155400 Length=901 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | || ||||||||||||||| |||||||| ||||| ||| ||||| Sbjct 595 GACAAAGAAGGCATCCCTCCAGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAA 536 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || ||||| ||||| ||||| || || ||||| ||| |||| || Sbjct 535 GATGGCAGAACTCTTGCGGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTG 476 Query 28767 AG 28768 || Sbjct 475 AG 474 >seq171660 Length=1062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||| || | || || || || || ||| || |||| || Sbjct 651 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 710 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || ||| ||||| ||||| | ||| |||||| Sbjct 711 CGATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 770 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| || | |||| | || || || || Sbjct 771 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 830 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 831 CATTCAAAAGGAATCAACCTTGCACTTGGT 860 >seq58964 Length=436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || || || || ||||||||||| ||| |||| || Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | ||||| ||| || |||||||| || | ||| ||| || Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || || || | || || | || |||| ||||| || Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||| || |||||||| |||| | | |||| || ||||| Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 98 >seq115308 Length=3903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| ||||||| || ||||| ||| ||| ||| || Sbjct 3790 ATGCAGATATTCGTGAAAACCCTAACGGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 3731 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || ||| ||||| ||||| | ||| ||| || Sbjct 3730 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 3671 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || ||||| || ||||| || ||||| ||| ||| | || ||||||||| Sbjct 3670 CAGAGGCTCATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACTCTCGCAGATTATAAC 3611 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || || || ||||| || ||| Sbjct 3610 ATCCAGAAGGAGTCTACACTCCAC 3587 >seq2159 Length=1969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || || |||||||||||| | |||| | || ||| Sbjct 1517 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 1458 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATT 28771 || ||||| ||||| || || ||||| ||| | || ||||| || Sbjct 1457 TACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTAAGGTT 1414 >seq194486 Length=5478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 28666 TAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 28725 ||||||| ||||| || |||||||| || ||||| ||||| ||| | |||| | || | Sbjct 4731 TAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAG 4790 Query 28726 ATTATAACATTCAAAAAGAATCTACTCTGCACATG 28760 |||| ||||||||||| ||||| || ||||| || Sbjct 4791 ATTACAACATTCAAAAGGAATCAACATTGCACTTG 4825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424311985585620