Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq124361 113 5e-20 seq29799 89.7 6e-13 >seq124361 Length=2041 Score = 113 bits (124), Expect = 5e-20 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 459 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTTCTGATATGTTGCTCCCTTGTCTGC 400 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | |||||| || || || | || |||| || ||| | |||||| Sbjct 399 ATGGCCATACGCAGTGCAGGCTTCCC--CGAAGAATCAACACTTAC--ACCAATAATTCT 344 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 ||||| ||| | ||||| |||| | | ||| || | |||||| |||||||||||||| Sbjct 343 TCCAGGCATCATCCTCTTGTACTCCTGAGATGTGGCCAGGAATGCTGCATGAGGACCTCC 284 Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTC 139552 || ||||| || | ||||||||| ||| ||| || ||||||| ||| |||| Sbjct 283 ATACCCCATCGGCACACCAAACCTCTGCGCGGAACCCACCACAATATCCGCCCCCAACTC 224 Query 139553 ACC 139555 ||| Sbjct 223 ACC 221 >seq29799 Length=644 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| || ||||| |||||||| || ||||||||||| Sbjct 638 ACACCAATAGGACCCATGCCAGGACCACCGCCTCCGTGTGGAATGCAAAATGTCTTATGG 579 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || ||||| || ||||| || ||| Sbjct 578 AGGTTGAGATGGCAGACATCAGCTCCA 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577472883965600