Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7966 100 5e-16 seq13283 96.9 6e-15 seq155400 86.0 1e-11 >seq7966 Length=1209 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| |||| |||| || | ||| || |||||||||||| Sbjct 867 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 926 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || |||||||| || ||||| || || || Sbjct 927 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 986 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || ||||| | ||| | ||| || || || || || Sbjct 987 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCC 1046 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || ||||| || || || || || ||||| |||||||| Sbjct 1047 ACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 1096 >seq13283 Length=967 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||| | || ||||| |||| |||| || | ||| || ||||||| Sbjct 564 ATTTGCATACCACTGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTA 623 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | || || || |||||||| || ||||| || Sbjct 624 TAGTCAGCAAGTGTCCTTCCATCCTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGG 683 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| ||||| | ||| | ||| ||| || || || Sbjct 684 TCTGGGGGAATACCCTCCTTGTCTTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAG 743 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| | | | || ||||| || || || || || ||||| |||||||| Sbjct 744 CTTTCCACTTCCACAATGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 799 >seq155400 Length=901 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || | ||| || || ||||| || | |||||||||||| ||||| || Sbjct 525 GTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATG 584 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||| || || || |||| ||| | ||| || ||||| ||| || || Sbjct 585 CCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCA 644 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 | ||| || || || || || || ||||| || || |||||||| || || Sbjct 645 ATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATTGTT 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897284035569600