Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7966 104 3e-17 seq58964 102 1e-16 seq2159 102 1e-16 seq155400 100 4e-16 seq59837 96.9 5e-15 seq6123 95.1 2e-14 seq150930 91.5 2e-13 seq200298 86.0 9e-12 >seq7966 Length=1209 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || || ||||| ||| ||| Sbjct 1096 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 1037 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| || ||||| || || || || ||||| || Sbjct 1036 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 977 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | |||| |||||| Sbjct 976 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 917 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || || || ||| Sbjct 916 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 887 >seq58964 Length=436 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||| ||||| || ||||| ||| || Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || || || || || ||||||||||| || ||||| || Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| || || ||| || | ||||||| || Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| |||| || ||||| ||| Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGTG 118 >seq2159 Length=1969 Score = 102 bits (112), Expect = 1e-16 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| | Sbjct 1541 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 1482 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| |||||| | ||||||| | | ||||||| ||| | || ||||| ||| Sbjct 1481 GAAGATGGAAGAACTCTTGCAGATTACA--ACATCCAAAAGGAGTCAACTCTTCACCTAG 1424 Query 156031 TGTTAAGATTAAGAGGCGG 156049 | ||||| || || || || Sbjct 1423 TTTTAAGGTTGAGGGGTGG 1405 >seq155400 Length=901 Score = 100 bits (110), Expect = 4e-16 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| || | ||||| |||| || || || || || | || ||||| Sbjct 694 AACAATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAG 635 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||||| || || || ||| || || || || ||||||||||| |||||| Sbjct 634 AGCAGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCA 575 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| ||| |||| | ||| || ||||| || |||||| ||||||| | | ||| Sbjct 574 GATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGAT 515 Query 155997 TATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAG 156037 || | | ||||||| ||| |||| ||||| | ||||| || Sbjct 514 TACA--ACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAG 474 >seq59837 Length=433 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||||||||| || ||||| ||| || Sbjct 106 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 165 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || || || || ||||||||||| || ||||| || Sbjct 166 AGACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 225 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| || ||| || || | ||||||| || Sbjct 226 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACAA 285 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || || ||||| ||| Sbjct 286 CATACAGAAGGAGTCAACTCTGCATTTGGTG 316 >seq6123 Length=1345 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||| || || || || || || |||| Sbjct 983 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 1042 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || |||||||| || || || ||||| || Sbjct 1043 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 1102 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||||| || ||| | | || | | ||||| || Sbjct 1103 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 1162 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTG 156032 || || |||| || | || |||||||||||| Sbjct 1163 AT-TCAAAAGGAGTCCACCCTTCATTTAGTG 1192 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| || || || || | || || ||| ||| Sbjct 755 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 814 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| |||||||| |||||||| || ||||| || Sbjct 815 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 874 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| |||||| ||| || ||||||||||| ||| Sbjct 875 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGAT 910 >seq150930 Length=8867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || || || | || ||||| ||| Sbjct 682 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGAGCTCT 741 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || |||||||| || ||||| || Sbjct 742 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 801 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| |||||||| || ||| | | || || |||| || ||| Sbjct 802 CAGAGGCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGCCGCACCCTAGCAGACTACAAT 861 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || ||||| ||| Sbjct 862 ATCCAGAAGGAGTCTACCCTCCATTTGGTG 891 >seq200298 Length=1237 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || || || |||||||| |||||||| || || ||| |||||| ||| ||||||||| | Sbjct 728 CAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTG 669 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||||| |||| | ||||||||||||| |||||| | || || || | ||| Sbjct 668 GAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTG 609 Query 156033 TTAAGATTAAGAGGCGG 156049 || || || || || || Sbjct 608 TTGAGGTTGAGGGGAGG 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729943700248000