Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1224 100 6e-16 seq186836 96.9 7e-15 seq2159 91.5 3e-13 seq58964 84.2 4e-11 >seq1224 Length=2434 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | | || ||||| | |||| ||| || |||||| ||||| Sbjct 1899 ATCCCACCACGAAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAATCC 1958 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| |||||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 1959 GCAAGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGT 2018 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || || || ||| || | ||| || || Sbjct 2019 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCA 2078 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || || || || || | ||||||||||| Sbjct 2079 ACCTCCAGGGTAATGGTCTTCCCTGTCAAAGTCTTCACGAATATCTGCAT 2128 >seq186836 Length=3669 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | || | |||||| |||||||||||| | Sbjct 461 ACCACCACGGAGACGCAGAACAAGGTGCAGGGTGGACTCTTTCTGGATATTATAATCGGC 520 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||| || || || || ||||| || || || ||||| || || Sbjct 521 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGG 580 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| || || ||| ||||| || | ||| || ||||| Sbjct 581 GATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCTAC 640 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| || || || | ||| | |||||| Sbjct 641 CTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAACCTGCAT 688 >seq2159 Length=1969 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| || | | ||| |||| || | ||| | ||| || ||| || ||| Sbjct 1399 ATAGTTCCACCCCTCAACCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAA 1458 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | |||| | |||| |||||||| ||||| ||||| || ||||||||||||||| Sbjct 1459 TCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCA 1518 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || || || ||||| ||||| || Sbjct 1519 GGAGGGATGCCTTCCTTATCCTG 1541 >seq58964 Length=436 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | ||| | |||||| || || ||||| Sbjct 98 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCT 157 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | | || || | || || || |||||||| | ||||| || || || Sbjct 158 GCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGG 217 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || || || ||| || | ||||| ||| Sbjct 218 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCC 277 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||||||||| || || || || || | ||| || |||||| Sbjct 278 ACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821294853000