Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2159 91.5 3e-13 seq1224 91.5 3e-13 seq6123 87.8 3e-12 seq58964 84.2 4e-11 >seq2159 Length=1969 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| || | | ||| |||| || | ||| | ||| || || || | Sbjct 1397 TCATAGTTCCACCCCTCAACCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGT 1456 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || || | | || |||||||| ||||| |||||||| ||||||||||| | Sbjct 1457 AATCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGAT 1516 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 1517 CAGGAGGGATGCCTTCCTTATCCTG 1541 >seq1224 Length=2434 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | | || ||||| | |||| ||| || ||||| ||||| Sbjct 1899 ATCCCACCACGAAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAATCC 1958 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | || |||||||| || ||||| || || || ||||| || || ||| Sbjct 1959 GCAAGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGT 2018 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || || || ||| || ||||| || || Sbjct 2019 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCA 2078 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || || || || || || | |||||||||||| Sbjct 2079 ACCTCCAGGGTAATGGTCTTCCCTGTCAAAGTCTTCACGAATATCTGCAT 2128 >seq6123 Length=1345 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | ||| || ||||| || || || ||||| |||||||| ||| Sbjct 900 TGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATT 841 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || || || ||| || || || || ||||| || ||| Sbjct 840 TTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCA 781 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| ||| |||||||| Sbjct 780 GTGAGAGTCTTAACGAAGATCTGCAT 755 >seq58964 Length=436 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | ||| | |||||| ||| || |||||| Sbjct 98 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCT 157 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | |||| || | || || || ||||| || | ||||| ||||| || Sbjct 158 GCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGG 217 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || || ||| || || ||||| ||| Sbjct 218 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCC 277 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | |||||||||||| || || || || || | || || |||||| Sbjct 278 ACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902751192924000