Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq127040 125 2e-23 seq31912 125 2e-23 seq184448 122 3e-22 seq203584 120 9e-22 seq203618 100 8e-16 seq1395 95.1 4e-14 seq209205 93.3 1e-13 >seq127040 Length=3218 Score = 125 bits (138), Expect = 2e-23 Identities = 314/471 (67%), Gaps = 16/471 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| || ||||| |||||||| | |||| ||| | | || ||| |||||| Sbjct 791 ATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAAACCATCC 850 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || ||| |||| |||||||| || ||||| ||||||||||| |||| || Sbjct 851 ATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTG---CCTC------CA 901 Query 289009 CCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||||||| |||| || | | || Sbjct 902 CCA-ATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 960 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 || | |||| | || | ||| | || | || || || || |||| |||||| Sbjct 961 AGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 1020 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | ||||||| ||||| |||||| | || | | || | || | ||| ||||| || | Sbjct 1021 AAACATTTCAACAAACTCAGAACCTGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAG 1079 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | |||| |||| || || ||||| || ||||| || || || | | ||||| || | Sbjct 1080 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCCTT 1139 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | || ||||||| ||||||| || || || | || Sbjct 1140 TAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCACTT 1199 Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 || ||| || | || || ||||| || || |||||| |||| |||| Sbjct 1200 CCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATCATCAAATGTAA 1250 >seq31912 Length=621 Score = 125 bits (138), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| | |||||| || |||||| ||| | | | | Sbjct 417 ATTTCTCACAGTCCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 358 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||||||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 357 CTGGATATAACCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 298 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || ||| || || | || |||| || || Sbjct 297 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAGTCCTTGAAGGTATGAATTCTCTACAAA 238 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || || ||||||| || | || | | | Sbjct 237 GCCACGACTTTCAGGTCCATAGTCGTCCTTAGTGAAATGTGGCAAAGTACGGTCTATGA- 179 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 |||| ||||| || || || || ||||| ||||||||||| | || | | ||||||| | Sbjct 178 AGCCATATGGAATTCGTTTACCCTCAACATTCTGCTGTCCAACACAAGCAGTCATCTGTG 119 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||||| | | ||| ||||| || || || | |||||| Sbjct 118 ATATATTGATAAAACTTCCCTTCGATCCGGCTGTAACCATA 78 >seq184448 Length=9645 Score = 122 bits (134), Expect = 3e-22 Identities = 233/341 (68%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||||| | |||||| || |||||| ||| | | | | Sbjct 3953 ATTTCTCACAGTCCCGTCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 3894 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 3893 CTGGATATACCCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 3834 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | ||| | || ||| |||| || | || | || || || Sbjct 3833 CATAGCATGAAAGAAGAACTCCTGTGGAGTTAGTCCCCGAAGGTATGAATTTTCTACAAA 3774 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || | |||| ||| || ||||| |||| || | || | | | Sbjct 3773 GCCACGACTTTCTGGTCCGTAGTCGTCCTTAGTGAAGTGGGGCAAAGTACGGTCTATGA- 3715 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| || || || ||||| ||||||||||||| || | | ||||||| | Sbjct 3714 ACCCATATGGGATTCGTTTACCCTCAACATTCTGCTGTCCCACACATGCAGTCATCTGTG 3655 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || | | ||| ||||| || || || | |||||| Sbjct 3654 ATATGTTGATAAAACTTCCCTTAGATCCGGCTGTAACCATA 3614 >seq203584 Length=4666 Score = 120 bits (132), Expect = 9e-22 Identities = 280/419 (67%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||||||||||||| || | || ||||| | ||| || ||||| ||||||||| | Sbjct 961 TAAATCCATCCATTTCAGTAAGAAGCTGATTCAATGTCTGCTCCCTCTCATCATTT---C 1017 Query 288998 CTCTTGAATCACCCGAATCGC-TCCtttttt---tACCAACAGCATCAATTTCGTCAATG 289053 ||| |||| || || ||| | ||| | |||||||||||||| || |||||| Sbjct 1018 CTC------CACC-GATTCCTGTCCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATG 1070 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 |||| || ||||| ||||| | | |||| | || || |||||||| | || ||| Sbjct 1071 AAAACCAAGCACGGCGAATTCTCTTTCGCCTTGTTGAACAAGTCTCTTACTCTAGAAGCT 1130 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | || ||| |||| || | || || || | || | || ||| | || | Sbjct 1131 CCTACTCCTACAAACATCTCAATGAACTCCGACCCTGACAGAGAAAAGAAAGGCACCCCT 1190 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 || || ||||| | ||| | ||||| |||||||| || || || || || || |||| Sbjct 1191 GCCTCTCCTGCAATGGCCTTGGCCAGCAGTGTCTTTCCGGTCCCCGGCGGCCCTACTAAA 1250 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 || || || || || | | |||| || | | | | ||||| || | | | |||| Sbjct 1251 AGTACCCCTTTAGGAATTCTTGCACCTACTGCAGCAAACTTCTCTGGAGTTCTCAGAAAT 1310 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || || || | | || | ||||| |||||| ||| || |||||| |||| || Sbjct 1311 TCAACTATCTCTTGGAAATCTTGCTTTGCTTCATCAACTCCAGCCACATCATCAAATGT 1369 >seq203618 Length=3964 Score = 100 bits (110), Expect = 8e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| ||||| ||||| ||| ||||| ||||| || ||||| | ||| || || Sbjct 906 AAAGTACCTTTCCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACT 847 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||||||||| || |||||||| || ||||| ||||| ||||||| |||| Sbjct 846 CGCAGCATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTG 787 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | |||| || |||| | | ||||| || || | |||| || ||| ||| Sbjct 786 GCACGAATGTTGTGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACAT 727 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | |||| | || |||||||| |||||||| ||| Sbjct 726 TCCTTCAAGGTATCATATATGCCTTCAATGCTATCATCTTTCAT 683 >seq1395 Length=2307 Score = 95.1 bits (104), Expect = 4e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| |||| Sbjct 1798 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 1857 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960 || |||| ||||||| |||||| || |||| ||||| Sbjct 1858 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 1894 >seq209205 Length=8743 Score = 93.3 bits (102), Expect = 1e-13 Identities = 211/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | | |||||| || | | Sbjct 1359 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCACATTGTCTTGCCTCTTGA 1300 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| | || | |||| |||| ||||||| ||||||| | ||| || ||| | Sbjct 1299 AATAAACTCCGAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCCGAACCA 1240 Query 289150 GATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | | || ||| || || | ||| |||||| |||| | || | ||| || || Sbjct 1239 GCCA-TAGAGAGAAATGGCACCCCGGATTCACCTGCTGTTGCCTTTGCAATAAGAGTTTT 1181 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || |||||||| || || | | || | || ||||| | |||||| || || Sbjct 1180 TCCAGTTCCAGGAGGGCCAACAAGAAGGGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 1121 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||||||| |||| |||| | || | |||| |||| || ||| | || |||||||| Sbjct 1120 GTATTTCTTAGGGTTCTTGAGGAAGTGCACAAATTCCATAATTTCTTGCTTAGCCTCATC 1061 Query 289329 ACATCCTGCTACATC 289343 ||| || |||||||| Sbjct 1060 ACAGCCAGCTACATC 1046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467842781792860