Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq120886 104 3e-17 seq182063 95.1 1e-14 seq124089 84.2 2e-11 >seq120886 Length=3350 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||||||| |||||||||||| | |||||| | ||||||||| || ||| ||||| Sbjct 2692 AGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 2751 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | ||||| ||||| ||| | ||||| || ||||| || ||| ||||||| ||| Sbjct 2752 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTC 2811 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTG 152172 ||| || ||| | ||||| |||| | |||| ||| || ||||||||||||| Sbjct 2812 TGATGGTTCCTTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCT 2870 Query 152173 CATATCCAACTTCTGA 152188 |||| ||| |||| || Sbjct 2871 CATACCCATCTTCAGA 2886 >seq182063 Length=5586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 |||||||||||| | |||||| | |||| |||| || ||| ||||| | ||||| Sbjct 2476 TACATCTTGGATTCAGCTGAGAATGCAGGAATTGAGCTGCCCTATTCTTGCAGGGCTGGG 2535 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 ||||| ||| | ||||| || ||||| || |||||||| || ||| ||| || Sbjct 2536 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 2595 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTGCATATCCAAC 152182 ||| | ||||| |||| | ||| ||| || ||||||||||||||| | |||||| | Sbjct 2596 TTCCTTGATGACAACCA-AACGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 2654 Query 152183 TTCTGA 152188 || || Sbjct 2655 CTCAGA 2660 >seq124089 Length=1327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 ||||| ||||| || ||| | || || || || || || ||| |||| ||| || || Sbjct 974 TACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 1033 Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164 || ||| |||||| | | |||||| |||||||||||||||| || || || || || Sbjct 1034 GACCAGTCTGACCAGAGCTTTCTTG-ATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 1092 Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197 ||||| || ||||| | |||||||| || || Sbjct 1093 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 1125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548174282381600