Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq161483 150 2e-30 seq122437 96.9 4e-14 seq167795 87.8 2e-11 seq123414 87.8 2e-11 seq118826 87.8 2e-11 >seq161483 Length=5526 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || || ||||||||||| || | | || Sbjct 1445 GCTTGGCCAATTCACCGGGCAGGAGGAGACGGACAGCAGTCTGGATCTCCCGGGAGGTGA 1504 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| ||||||||| |||| |||||| | | |||| | |||| | Sbjct 1505 TGGTGGAGCGCTTGTTGTAGTGCGCCAAGCGGCTGGCCTCAGCGGCGATCCTCTCGAAGA 1564 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||||| | |||| |||||| || |||||||| Sbjct 1565 TGTCGTTCACGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATACCGGTGTCGGGGT 1624 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| || || ||||||||| Sbjct 1625 GCACTTGCTTAAGTACTTTGTAGATG 1650 >seq122437 Length=2070 Score = 96.9 bits (106), Expect = 4e-14 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 1592151 ACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 1592210 ||||||||||| | ||| ||||| |||| | || |||||||| || ||||| | Sbjct 1916 ACGTCGAGCAGGACCTCCTGTTTGATCTGATATTGGCAGCCAACTATCTAAACATCGCGG 1975 Query 1592211 CTCTGCTCGATCTTG-GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAG 1592269 ||||| || |||| ||| || ||||||| ||||||||||||| ||| | ||||| Sbjct 1976 GGCTGCTGGA-CTTGACATGCCAGGCTGTGGCGGACATGATCAAGGGAAAGACTCCCGAA 2034 Query 1592270 GAGATCCGCAAGACCTTTAACATCAAG 1592296 |||| |||||||| || ||||||||| Sbjct 2035 CAGATTCGCAAGACTTTCAACATCAAG 2061 >seq167795 Length=17472 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| ||||| || |||| Sbjct 12853 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTGCTGGA-CTTGAC 12911 Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 || || ||||||| ||||||||||||| ||| | ||||| |||| |||||||| || Sbjct 12912 ATGTCAGGCTGTGGCGGACATGATCAAGGGAAAGACTCCCGAACAGATTCGCAAGACTTT 12971 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 12972 CAACATCAAG 12981 >seq123414 Length=1677 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| || || || |||| Sbjct 1190 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTACTGGA-CTTGAC 1248 Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 ||| || ||||||| ||||||||||||| ||| | ||||| ||||| ||| |||| || Sbjct 1249 ATGCCAGACTGTGGCAGACATGATCAAGGGAAAGACTCCCGAAGAGATTCGCCAGACTTT 1308 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 1309 CAACATCAAG 1318 >seq118826 Length=2043 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| || || ||||| ||| || |||||||| || Sbjct 1061 GCTGCTAACTATCTGAACATCAAGGGCCTTCTGGATCTGACTTGCCAGACTGTGGCCGAC 1120 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || || |||||||||||||| || ||||| ||| Sbjct 1121 ATGATCAAGGGGAAGACTCCAGAAGAGATCCGCAAGACTTTCAACATTAAG 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6089841606117260