Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq155400 95.1 2e-14 seq200298 93.3 7e-14 seq59837 91.5 2e-13 >seq155400 Length=901 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || || || || |||||||| || || | | Sbjct 687 TGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGCAGTG 628 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || || ||||||||||| || || ||||||| Sbjct 627 ATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAAC 568 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || ||| | || ||| ||||| | | ||||| || | Sbjct 567 AGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTACAACA 508 Query 146212 TACAAAAAGAATCGACT 146228 | ||||| || |||||| Sbjct 507 TCCAAAAGGAGTCGACT 491 >seq200298 Length=1237 Score = 93.3 bits (102), Expect = 7e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || |||||||| || || ||||| || ||||| |||||||| ||||| || || || ||| Sbjct 722 AAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGAT 663 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | |||| | ||||||||||||| |||||||| || ||| |||| | || || | Sbjct 662 GGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTGAGG 603 Query 146247 TTAAGAGGAGG 146257 || || ||||| Sbjct 602 TTGAGGGGAGG 592 >seq59837 Length=433 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||| ||||| |||||| | || || ||| | Sbjct 108 TGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTCAG 167 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || || |||||||||||||| || || || | Sbjct 168 ACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCAGC 227 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| |||||||| || || | || ||| ||| || | ||||||| || | Sbjct 228 AGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACAACA 287 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 |||| || || || ||| | ||||| || Sbjct 288 TACAGAAGGAGTCAACTCTGCATTTGGT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784095048077600