Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq124089 125 9e-24 seq182063 93.3 5e-14 seq120886 89.7 6e-13 >seq124089 Length=1327 Score = 125 bits (138), Expect = 9e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| ||||| || || || || || || |||||| | || || || ||||||| Sbjct 921 CTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCT 980 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 |||| || ||| | || ||| |||| || || || | ||||| || || || || |||| Sbjct 981 GTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGT 1040 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||||||| || |||||||||||||| |||| | || ||| || | ||||| || | Sbjct 1041 CTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCG 1100 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 | || || | || ||| || ||||||| | || ||||| || || Sbjct 1101 CCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 1149 >seq182063 Length=5586 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 138507 AGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGG 138566 ||||| ||| |||| | | |||||| |||||| | ||| | ||||| | ||||| Sbjct 2447 AGAACGAAT--TTGATGCTCCAGATGATGCTTACATCTTGGATTCAGCTGAGAATGCAGG 2504 Query 138567 TATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT 138626 ||||| || ||||| || || | ||||| ||||| || |||||||| || || | || Sbjct 2505 AATTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGT 2564 Query 138627 TGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAA 138676 | ||| || || || |||||||| || ||||||||||| |||||| Sbjct 2565 AGCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA 2614 >seq120886 Length=3350 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 |||||| | | ||||| |||||| | ||| | ||||| | ||||| |||| || Sbjct 2681 TTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTG 2740 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 ||||| || || | ||||| ||||| || |||||||| || || | || | ||| | Sbjct 2741 CCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCA 2800 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCAT 138695 || || |||||||| || ||||||||||| |||||| || || ||| || | | | Sbjct 2801 GTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCT 2859 Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGT 138726 ||| || || ||||||| | || || ||| Sbjct 2860 GACCTGTGTCTCATACCCATCTTCAGACTGT 2890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604071418344800