Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq184448 100 7e-16 seq191031 84.2 5e-11 >seq184448 Length=9645 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| || |||||||||||| Sbjct 2351 CATTTGAATGATGGAGACTTTGTCCTCTTCAATCGTCAACCCAGTCTCCATAAAATGTCT 2410 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| || | | ||||| | | || | || |||||| ||||| | || Sbjct 2411 ATTATGGGGCACAGAATCAAAATCATGCCTTACTCAACTTTTCGACTAAATCTCTCTGTC 2470 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||||| ||||| ||||||||||| ||||||||||||||||| || || || ||| Sbjct 2471 ACTTCGCCTTACAATGCTGATTTTGATGGGGATGAAATGAATATGCACGTTCCCCAGTCA 2530 >seq191031 Length=2240 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/160 (73%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 305331 TTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAG 305390 |||| ||||| ||||||||| ||||| |||||| | ||| ||||| | ||| Sbjct 1662 TTCTTTTCAACAGGCAACCAAGCTTGCATCGTATGTCTGTCATGTGTCATAGGGC--AAG 1719 Query 305391 TATTAT-CTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||||| | | |||| || || | || |||| | | ||| | ||||||||||| Sbjct 1720 GATTATGCCGCATTGGAGGACGTTGAGGTTTAATGAATCTCTTTGCAACCCTTATAATGC 1779 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||||| |||||||||||||| ||||| || ||| Sbjct 1780 TGATTTTGATGGTGATGAAATGAATATTCATGTCCCACAA 1819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183607671099580