Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq192635 113 3e-20 seq150930 105 4e-18 seq13283 102 5e-17 seq7966 102 5e-17 seq59837 95.1 8e-15 seq171660 89.7 3e-13 seq117973 86.0 4e-12 seq58964 86.0 4e-12 seq2159 84.2 1e-11 seq155400 82.4 5e-11 seq520 82.4 5e-11 >seq192635 Length=3999 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 1862 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTC 1803 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||||||||| || || | |||||||| || |||| | || || ||||| Sbjct 1802 GAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 1743 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || ||| |||| ||| | ||||||| || ||||| || | ||||||||| | Sbjct 1742 AATCTTGGCCTTC-ACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCT 1684 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 1683 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1653 >seq150930 Length=8867 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| || || || ||||||||||| | Sbjct 1137 ACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGC 1078 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || ||||||||||| || | | |||||| ||| | || Sbjct 1077 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 1018 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | |||| ||| | |||||| || |||| Sbjct 1017 GATACCCTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCAATGGTGTCAGAAGACTCCA 959 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||| || || || || |||||||||||| Sbjct 958 CCTCAAGGGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATA 909 >seq13283 Length=967 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||| | || ||| | |||||| || |||||| ||| ||||| || || || || | Sbjct 572 ACCACTGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGC 631 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || || || ||||||||||| | |||||| ||| | || Sbjct 632 AAGTGTCCTTCCATCCTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 691 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || ||||| |||||| |||| |||| || | |||||| ||| || Sbjct 692 AATACCCTCCTTGTCTTGAATTTTAGCTTTC-ACATTATCAATGGTGTCAGAGCT---TT 747 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || |||| ||||| || || | || || |||||||| ||||| Sbjct 748 CCACTTCCACAATGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 799 >seq7966 Length=1209 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || |||||| ||| ||||| || || || || | Sbjct 869 ACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGC 928 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || || || ||||||||||| | |||||| ||| | || Sbjct 929 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 988 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || || || |||||| |||| |||| || | |||||| ||| || Sbjct 989 AATACCCTCCTTATCCTGAATTTTAGCTTTC-ACATTATCTATGGTGTCAGAGCT---TT 1044 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| ||||| || || | || || |||||||| ||||| Sbjct 1045 CCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 1096 >seq59837 Length=433 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| ||| || |||||||||||||| | Sbjct 333 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 274 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | || ||||| ||||| || | | |||||| ||| | || Sbjct 273 AGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 214 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| ||| | | |||| || | ||||| ||| ||| Sbjct 213 ATGCCTTCTTTGTCCTGAATCTTC-GCCTTGACATTATCAATTGTGTCTGAGCT---TTC 158 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || ||||| ||||| || || || |||||||| ||||| Sbjct 157 CACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 107 >seq171660 Length=1062 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||||||| |||||||| || | |||||| || |||| || Sbjct 404 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCGTCCTCA 345 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||| | || || || | || | || || ||||| Sbjct 344 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 285 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || || || |||| |||| ||||| |||| || || |||| ||||| || Sbjct 284 ATCTT-TGCTTTGACATTGTCAATAGTGTCAGAGCTT---TCAACCTCAAGGGTGATGGT 229 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| | ||||| |||||||||||||| Sbjct 228 CTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 196 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||| || | || || | | |||| ||||| ||||| || ||||| Sbjct 842 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 783 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | | |||||||||| | || | ||| || ||||| || ||| || | ||| Sbjct 782 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CATT 724 Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 |||| || ||| |||||| || | ||||| || || || || | ||| ||||| Sbjct 723 GTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTAC 664 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 663 AAAGATCTGCAT 652 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 33568 ATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGC 33627 |||||||| || | || || | | |||| ||||| ||||| || ||||| || | | | Sbjct 1061 ATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTC 1002 Query 33628 TGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GT 33686 ||||||||| | || | ||| || ||||| ||||| || | |||| |||| || Sbjct 1001 TGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATTTT-TGCCTTGACATTGTCAATTGT 943 Query 33687 GTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| |||||| || | ||||| || || || || | ||| |||||||||||||| Sbjct 942 ATCGGAGCTTTCCACCTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTG 883 Query 33747 CAT 33749 ||| Sbjct 882 CAT 880 >seq117973 Length=1091 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||||||||| || |||||||| | | Sbjct 931 CCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCG 872 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | ||||| |||||||| || | | |||||||||| | || Sbjct 871 AGTGTACGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGG 812 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| ||| || || | |||| || | ||||| ||| || Sbjct 811 ATGCCCTCCTTGTCCTGAATCTT-TGCCTTGACATTATCGATTGTGTCAGAGCTC---TC 756 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || ||||| | || || |||||||||||||| Sbjct 755 AACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 705 >seq58964 Length=436 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| |||||| || ||||||||||| | Sbjct 101 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 160 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| || | || ||||| ||||| || | | |||||| ||| | || Sbjct 161 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 220 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| || || | || | || | ||||| ||| ||| Sbjct 221 ATGCCTTCTTTGTCCTGAATCTT-TGCCTTGACGTTATCAATTGTGTCTGAGCT---TTC 276 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || ||||| || || || || || ||||| || ||||| Sbjct 277 CACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 >seq2159 Length=1969 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| | ||| || | || ||||| ||| ||||| ||||||||||| | Sbjct 1405 CCACCCCTCAACCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGCA 1464 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||||||| || |||||||||||||| | ||| ||||| | || Sbjct 1465 AGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGGG 1524 Query 33643 ACACCTTCTTTGTC 33656 | ||||| || || Sbjct 1525 ATGCCTTCCTTATC 1538 >seq155400 Length=901 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||||| || ||||| ||| ||||| ||||||||||| | || || | | || Sbjct 477 AACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCATCT 536 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||| ||| || || ||||| |||| | ||| |||||| | || | ||||||||||| Sbjct 537 TCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTCC 596 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || | || |||| ||| | ||| || || || || |||| ||||| || Sbjct 597 TGGATCTT-GGCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGT 655 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | ||||| || || || |||||| Sbjct 656 CTTCCCGGTCAGAGTTTTCACGAAAATTTGCATA 689 >seq520 Length=4969 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| |||| | ||||| |||| || | || |||||||| || | Sbjct 2010 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 1951 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | |||||||||||| | || | ||||| || || || || | | |||| | Sbjct 1950 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTTTCTTGGATCTT-GGCCTTGACATTG 1892 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||||||| ||||| || | ||||| || || || |||| ||||| || Sbjct 1891 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 1832 Query 33739 AAGATCTGCATAGTTGGTG 33757 || |||||||| ||| || Sbjct 1831 AATATCTGCATCTTTGCTG 1813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327859598457600