Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12378 104 2e-17 seq520 82.4 7e-11 >seq12378 Length=999 Score = 104 bits (114), Expect = 2e-17 Identities = 160/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 46761 CCATGCGTTCGC-AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| |||||||| ||||||||| |||| |||||||| || | | || Sbjct 22 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCG---GAGAC 77 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| ||||| || ||||| | || || ||||| || || Sbjct 78 TTTTGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTT 137 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| | |||| || | |||||||| ||||| ||| ||||| Sbjct 138 CTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGA 197 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 |||||||||||| || ||||| || ||| ||||| ||||| || Sbjct 198 GTTGATCTCGCGAGATGAAGGGCTCCACTGCGACTTCGCGTGCCT 242 >seq520 Length=4969 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || |||||||||||| || ||| || || |||||||| || |||| ||| Sbjct 2010 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 1951 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| |||||||| || || || || || | | | Sbjct 1950 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTTTCTTGGATCTTGGCCTTGACATTGT 1891 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || ||| | |||||| |||| || | || || || || || ||||| | || Sbjct 1890 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 1831 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 1830 ATATCTGCAT 1821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475355448640800