Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq120886 100 3e-16 seq124089 95.1 1e-14 seq182063 91.5 2e-13 >seq120886 Length=3350 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 2702 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 2761 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | ||||| |||| ||||||||||| ||| Sbjct 2762 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCC 2821 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTT-TTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || || |||| ||||| |||| || | Sbjct 2822 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 2880 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 | || |||||||| || ||| Sbjct 2881 TTCAGACTGTGTGATCCACACT 2902 >seq124089 Length=1327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | || || || || |||||||| | || | || || ||||| || ||| Sbjct 932 TACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGT 991 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 | ||||||||||| || || || || || || || || ||||||||||||||| | Sbjct 992 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 1051 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 || | ||||||||||||||||| ||| || | | || ||||| || |||||| Sbjct 1052 TTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCT 1108 >seq182063 Length=5586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | |||||| |||| | ||||||||| | ||||| Sbjct 2476 TACATCTTGGATTCAGCTGAGAATGCAGGAATTGAGCTGCCCTATTCTTGCAGGGCTGGG 2535 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | |||||||||| ||||||||||| ||| Sbjct 2536 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 2595 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATT-CCTTTTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | ||| || || | |||| |||||| | ||||| | Sbjct 2596 TTCCTTGATGACAACCA-AACGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 2654 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 || |||||||| || ||| Sbjct 2655 CTCAGACTGTGTGATCCACACT 2676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558029846836000