Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq203618 141 1e-28 seq12378 84.2 3e-11 >seq203618 Length=3964 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||| | |||| | |||| |||||| ||||| || || Sbjct 886 TCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCC 827 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| ||||||||| || | || ||||| || || ||| Sbjct 826 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGA 767 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| ||| | |||||| ||||| || |||||||| Sbjct 766 GACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATCATATAT 707 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||| | ||| || |||||| Sbjct 706 GCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 664 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | |||||| | |||||||| || ||||||||||| | ||| | |||| | Sbjct 540 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCACCGCTGAGACATGAGATGG 481 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||| | ||||| ||||| || || ||||| | || || | ||| | | Sbjct 480 TATGTTTTGATAACAGATTCAATATCATCCTTGTGTATTCCAACAGCAACCCTCATTAGC 421 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||| | ||||| || | | || || |||||||| | || ||| Sbjct 420 ATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAGA 361 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || ||||| |||| || |||||| | || ||||| || Sbjct 360 GTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 314 >seq12378 Length=999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || || || ||||||| || || ||||| || || || || Sbjct 240 GCACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 181 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| | || |||||||| ||||||||||| || ||| ||| ||| || |||| Sbjct 180 ACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGA 122 Query 39735 AGATGCCTTCTAC 39747 |||| ||||| || Sbjct 121 AGATCCCTTCCAC 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685098967039200