Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq520 95.1 1e-14 seq171660 93.3 4e-14 seq6123 93.3 4e-14 seq192635 91.5 1e-13 seq117973 89.7 4e-13 seq7966 89.7 4e-13 seq165785 86.0 5e-12 >seq520 Length=4969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||||||| || | |||| |||| |||||||| || |||||| | | Sbjct 2010 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 1951 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||||||||| ||||| || || | || || || || ||||||| || | | | Sbjct 1950 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTTTCTTGGATCTTGGCCTTGACATTGT 1891 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| || || || || ||||| || | || ||||| || |||||||| | Sbjct 1890 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 1831 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 1830 ATATCTGCAT 1821 >seq171660 Length=1062 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || |||||||| || |||||||| || ||| ||| |||| || Sbjct 404 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTC-CGCCCGTCCTC 346 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | || || | ||||| ||||| || | ||||| || || Sbjct 345 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 286 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | |||||| | | |||||| || || || || | || Sbjct 285 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 226 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||| ||||| Sbjct 225 GCCTGTGAGGGTTTTCACAAAGATCTGCAT 196 >seq6123 Length=1345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || |||||||| ||||| || || | |||| | || || Sbjct 1191 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 1132 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || || || || | |||||||||||| Sbjct 1131 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 1072 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | ||||| || | ||||| | ||| Sbjct 1071 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 1012 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 1011 CCAGTGAGAGTCTTCACAAAGATTTGCAT 983 >seq192635 Length=3999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 1880 GCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 1821 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || |||| ||||||||||| |||||| | ||||| ||||| || |||||||| Sbjct 1820 GAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 1761 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | ||||| | || || || Sbjct 1760 GATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCAC 1701 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || ||||| || |||||||| ||||| ||||| Sbjct 1700 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1653 >seq117973 Length=1091 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||||||||| |||||||| || |||| || |||| |||||||| || || Sbjct 673 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTTCGGC-CGTCCTCGAGCTGCTTGCC 615 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | || || || || || | ||||| || || |||||| || Sbjct 614 AGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTT 555 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | |||||| || || || |||| ||||| || || || Sbjct 554 GACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGT 495 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||| ||||| Sbjct 494 TTTCACAAAGATCTGCAT 477 >seq7966 Length=1209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || ||||||||||| ||||| | Sbjct 870 CCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTG-C 928 Query 27081 ATGTTGCGCTCG-TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || || || ||||| ||||| || |||| | | ||| || || || || Sbjct 929 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 988 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| || || ||||| | |||| ||||| | | ||| || Sbjct 989 AATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCAC 1048 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| || || || || |||||||||||||| Sbjct 1049 TTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 1096 >seq165785 Length=1301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| | | | || |||| |||||||| || ||| Sbjct 1227 GTCGACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCG 1168 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||||||||| || || | ||||| || || ||||||| ||| Sbjct 1167 GCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 1108 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || | | ||||| || || || Sbjct 1107 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTC 1048 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1047 TTCACAAAGATCTGCAT 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423842793987360