Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq127040 91.5 2e-13 >seq127040 Length=3218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/339 (66%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTC 11538 ||| || ||||| | | ||||| || |||| |||||||| ||||| | | || Sbjct 784 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAA---CCACAATGATACCAGTGTTACCCTC 840 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||| || |||||||| |||||||| || Sbjct 841 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCTCC 900 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| |||| | | ||| || || |||||||| ||||||| || ||||| Sbjct 901 ---ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 957 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || ||| ||||| || | | ||| ||||| || || | ||||| ||||| Sbjct 958 GCAAGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACC 1017 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||||| || ||||| | | | ||| || || || ||| | |||||| Sbjct 1018 AACAAACATTTCAACAAACTCAGAACCTGAGATAGAGAAAAAAGGAACACCAGCTTCACC 1077 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || || || |||||||| || ||||| Sbjct 1078 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626377292688000