Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq127040 91.5 2e-13
>seq127040
Length=3218
Score = 91.5 bits (100), Expect = 2e-13
Identities = 225/339 (66%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTC 11538
||| || ||||| | | ||||| || |||| |||||||| ||||| | | ||
Sbjct 784 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAA---CCACAATGATACCAGTGTTACCCTC 840
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| |||||||| || || | | ||||||| || |||||||| |||||||| ||
Sbjct 841 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCTCC 900
Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655
|||| |||| | | ||| || || |||||||| ||||||| || |||||
Sbjct 901 ---ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 957
Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715
|| ||| ||||| || | | ||| ||||| || || | ||||| |||||
Sbjct 958 GCAAGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACC 1017
Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775
||||||||| || ||||| | | | ||| || || || ||| | ||||||
Sbjct 1018 AACAAACATTTCAACAAACTCAGAACCTGAGATAGAGAAAAAAGGAACACCAGCTTCACC 1077
Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
|| || || || || || |||||||| || |||||
Sbjct 1078 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 1116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626377292688000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |