Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12378 129 7e-25 >seq12378 Length=999 Score = 129 bits (142), Expect = 7e-25 Identities = 347/522 (66%), Gaps = 23/522 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 524 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 465 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCAC-TCCAATCTGTTTGAGGAGA 129844 ||||||||||||||| | | || || | || ||| | | || || Sbjct 464 CAATCAAATGGGTTCTGCACATCATACAGTTTCC---CATATCCCAACGCACCCAGCAGC 408 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 | ||| | |||| |||| ||||||| | |||| || |||||| || | | | Sbjct 407 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 348 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || | |||||| ||| |||| || |||| ||||| || || | ||||||||| | Sbjct 347 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 288 Query 129965 TGAATGGTCTCC---GTGCCAGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAA 130019 | | | |||| ||| || | || | | | | | || || |||| | | Sbjct 287 TTCACGCGCTCCTCGGTG--AGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGA 233 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || |||||| || || || || ||||| | || ||||||||| |||||| |||| Sbjct 232 AGTCGCAGTGGAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCA 173 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 | | || ||||| || | ||| || ||||| || || || |||||||||||||| | Sbjct 172 TCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTT 113 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG--AGCGGGACTTTGTATCAAACCA 130197 |||| || ||||| || | || ||||| ||||| | || | | || | ||| Sbjct 112 CCACGCAGGCGAAGGCCACGATCCGCTCCGCAAAAGTCTCCGAGCC-----GTCGATCCA 58 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 |||| |||||||||||||||||| ||| || |||| ||| Sbjct 57 TTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616805777856800