Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq127040 123 3e-23 seq12378 98.7 1e-15 seq159780 89.7 6e-13 >seq127040 Length=3218 Score = 123 bits (136), Expect = 3e-23 Identities = 308/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || ||||| | | || || || || | |||| ||||| || | | ||||| Sbjct 784 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 843 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| || |||| || ||||| | ||||||||| || Sbjct 844 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 900 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | ||| ||| || |||||||| ||||||| || || ||||| Sbjct 901 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 960 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 ||| ||||| ||| |||| ||| ||||| || || || || || |||||| Sbjct 961 AGGTGCGTTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCA 1018 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 |||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 1019 ACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACC 1077 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || || |||||||| || || ||||| || | || || | || Sbjct 1078 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCC 1137 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||||| || ||| || | |||||||||| | ||| | || ||||| | Sbjct 1138 TTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCAC 1197 Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||| | || || | ||||| | || | ||| ||||||| Sbjct 1198 TTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 1239 >seq12378 Length=999 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||||| ||||| || | || || || || || || || ||||||||||| || |||| Sbjct 79 TTTGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 138 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||| || ||||| || | ||||| ||||| |||||| |||||| Sbjct 139 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 198 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || || || || |||||| Sbjct 199 TTGATCTCGCGAGATGAAGGGCTCCAC 225 >seq159780 Length=2554 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || |||||||| ||||| | || |||||||| || |||| |||||||| | Sbjct 325 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 268 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | ||| | || || ||||||||||||||||| || || ||| Sbjct 267 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 208 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || || ||||| || || ||||| | |||| || | | || ||||| | Sbjct 207 CAGGG--CGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 150 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| ||||||||| | | |||| ||| || ||| || || |||| Sbjct 149 CCACAAACAGCTCCACAAACTCCGACGCGGCACACGAGAAGAACGGCGTGCCAGCCTCAC 90 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || | ||| || || || || ||||| || ||||| || Sbjct 89 CAGCCACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGG 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581724053607200