Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12378 107 2e-18 >seq12378 Length=999 Score = 107 bits (118), Expect = 2e-18 Identities = 330/497 (66%), Gaps = 14/497 (3%) Strand=Plus/Plus Query 59929 aaaaaGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATTTGCACAACGTCT 59986 |||| || | |||||| || | ||||| || || |||| | ||||| | || | Sbjct 35 AAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCGGAGACT--TTTGCGGAGCGGAT 92 Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 | | || || || ||||||||||| ||||||||||| || ||||| || || || || Sbjct 93 CGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTG 152 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 ||| |||||||| || | |||||||| |||| ||||| |||||| |||| || || || Sbjct 153 GCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGA 212 Query 60107 CGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCC 60165 || || ||||| || || || ||| | ||||| || | ||| ||| || || Sbjct 213 TGAAGGGCTCCACTGCGACTTCGC-GTGCCTTCTCTACTCCCTCCT-CCGGATGAA-GCT 269 Query 60166 CTTCCAAGGATATTCACAAG---ATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCA 60222 | || |||| ||| || || | | || ||| | ||||| |||||| Sbjct 270 C-ACCGAGGAGCGCGTGAAGTCAATCGTGCGGAACGCGGTTGACATAGAGAGGGAGTTCG 328 Query 60223 TCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACA 60282 || || ||| | || ||| | | || ||| ||| || ||| ||||||| Sbjct 329 TCTGCGACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACA 388 Query 60283 TTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGA 60342 | |||| ||||| || | || ||| ||| ||| | || | | || | ||| Sbjct 389 TCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGGGAAACTGTATGATGTGC 448 Query 60343 ATAACCCTTTCGACTGGATGGAGACCATCTCGT-TGGAAGGGAAGACCAACTTCTTTGAG 60401 | ||||| || || ||||||||| || | || | | ||||||||||| ||||||||| Sbjct 449 AGAACCCATTTGATTGGATGGAGCTGAT-TAGTCTTCAGGGGAAGACCAATTTCTTTGAG 507 Query 60402 AAGCGGGTCGGGGATTA 60418 ||| | || ||||| || Sbjct 508 AAGAGAGTTGGGGAGTA 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547079574283200