Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq165465 86.0 8e-12 seq168621 82.4 1e-10 >seq165465 Length=5633 Score = 86.0 bits (94), Expect = 8e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 183008 TTTCAAGGTGCTAGGTTTTCAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAA 183067 || || |||||| | |||| || ||| || |||| || || ||||| | | Sbjct 3508 TTCCACGGTGCTCGTTTTTTCAATTATGAAGCATGGCAAAGTGATCCTACTCACATTGGA 3449 Query 183068 CCTGGTGCTCAAGTGGTTTGGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGT 183127 ||| |||| |||||||||||||| ||| | |||||||| ||||||||||| ||| || Sbjct 3448 CCTAGTGCCCAAGTGGTTTGGCCAATAATGGGTCAAGAAATATTGAATGGTGATGTAGGC 3389 Query 183128 GCAGGATATCAAGGTATTAGAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGT 183187 | || | | ||| || ||| || ||||| || |||||| | ||| | |||| || Sbjct 3388 GGGGGTTTCCCAGGAATACAAATAACCTCTGGGTT-TTTCAGCTTTGGTGGGCATCTGGA 3330 Query 183188 ATAACAAATGAA 183199 ||||| | |||| Sbjct 3329 ATAACTAGTGAA 3318 >seq168621 Length=4998 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 183008 TTTCAAGGTGCTAGGTTTTCAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAA 183067 || || |||||| | |||| || ||| || |||| || || ||||| | | Sbjct 3314 TTCCACGGTGCTCGTTTTTTCAATTATGAAGCATGGCAAAGTGATCCTACTCACATTGGA 3255 Query 183068 CCTGGTGCTCAAGTGGTTTGGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGT 183127 ||| |||| |||||||||||||| ||| | |||||||| ||||||||||| ||| || Sbjct 3254 CCTAGTGCCCAAGTGGTTTGGCCAATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGC 3195 Query 183128 GCAGGATATCAAGGTATTAGAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGT 183187 | || | | ||| | ||| || ||||| || |||||| | ||| ||||| || Sbjct 3194 GGGGGTTTCCCAGGAGTACAAATAACCTCTGGATT-TTTCAGTTTTGGCAAGCATCTGGA 3136 Query 183188 ATAACAAATGAAACTCAACT 183207 ||||| | |||| ||||| Sbjct 3135 ATAACTAGTGAATTACAACT 3116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763547184800