Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq58964 96.9 2e-15 seq171660 89.7 4e-13 seq59837 86.0 4e-12 seq155400 84.2 2e-11 seq153096 84.2 2e-11 >seq58964 Length=436 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||| ||| | || |||||| ||||| | || || |||||| | Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||| | ||||| ||| || ||||||||||| |||| Sbjct 268 AGAC-----ACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCA 214 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || ||||| ||||| || | || |||| | | || | ||| Sbjct 213 GACCAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGAT 154 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || |||||| ||| |||||||||| | ||| | ||||| || Sbjct 153 TACAACATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 101 >seq171660 Length=1062 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || ||||||||||| || || | || || |||||| | Sbjct 651 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 710 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || ||||| ||||| || || ||||| || ||| |||| || Sbjct 711 CGATACAATTGACAAT--GTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGAT 768 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| ||||| |||| | | | |||| | || || Sbjct 769 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTG-CAGACTA 827 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || || ||||| |||||| | || ||||||| || Sbjct 828 CAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 878 >seq59837 Length=433 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||| | || |||||| |||||| | || || |||||| | Sbjct 106 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 165 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| || || ||||||||||| |||| || Sbjct 166 AGACACAATTGATAAT--GTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGAC 223 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||| || | || || | | | || | |||||| Sbjct 224 CAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTAC 283 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| ||| |||||||||| | ||| | ||||| || Sbjct 284 AACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 333 >seq155400 Length=901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 27779 ACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATG 27838 |||| | || ||||||||||| ||||||||||| || ||||| || || ||||| | Sbjct 699 ACAAAAACAATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGG 640 Query 27839 TCGAAAGCACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGT 27896 |||| |||| | || || ||||| |||||| || || ||||||||||| | Sbjct 639 TCGAGAGCAGTGATACCATCGACAAT--GTCAAAGCCAAGATCCAGGACAAAGAAGGCAT 582 Query 27897 TCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--- 27953 || || || || | | || ||||| || || ||| |||| || | |||| Sbjct 581 CCCTCCAGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATG---GCAGAAC 525 Query 27954 -CTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | ||||||||||||||||| ||| ||| | || |||| ||| Sbjct 524 TCTTG-CGGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTG 476 >seq153096 Length=4879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || || || || || || | || ||||| ||| || Sbjct 2988 ATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCC 3047 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || |||| ||||| || || ||||| || || |||| ||| | Sbjct 3048 GACACCATCGACAA--CGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACC 3105 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || ||||| || || ||||| || | || | ||| ||||||||| Sbjct 3106 AGCAGAGGTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGGCCGATTACA 3165 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || ||| ||| | |||||||| | ||| | || || || Sbjct 3166 ATATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTTCGCGGTGG 3214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354948231753060