Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq150930 111 1e-19 seq171660 95.1 1e-14 seq117973 91.5 1e-13 >seq150930 Length=8867 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || ||||| ||||| ||||| || || | || || Sbjct 663 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCGGCCATCCTC 604 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| | Sbjct 603 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC-T 545 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | | | | ||| | | | || || |||||||| || | |||||| | | Sbjct 544 GAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCT 485 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || || |||||||||| Sbjct 484 TGCCGGTGAGGGTTTTCACGAAAATTTGCATCT 452 >seq171660 Length=1062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| ||||| ||||||||||| || || | || || Sbjct 633 CACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTC 574 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| Sbjct 573 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTG 514 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||||| ||| || |||| ||||| | || Sbjct 513 GATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCTCCAATGTGATGGTCTT 454 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| ||||| Sbjct 453 CCCTGTGAGAGTCTTAACAAAGATCTGCAT 424 >seq117973 Length=1091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||||||||| ||||| ||||| || ||||| || | || || Sbjct 914 CACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGTGTACGGCCATCCTC 855 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| | Sbjct 854 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC-T 796 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || |||| | | | || || ||| ||| || |||| ||||| Sbjct 795 GAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCT---CTCAACCTCCAATGTGATGG 739 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 738 TCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428442148362140