Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq155400 107 1e-18 seq171660 104 2e-17 seq117973 102 5e-17 seq520 100 2e-16 seq2159 95.1 8e-15 seq150930 93.3 3e-14 seq6123 84.2 1e-11 seq58964 82.4 5e-11 >seq155400 Length=901 Score = 107 bits (118), Expect = 1e-18 Identities = 176/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||| ||||| || || || || || |||||| | || || || | Sbjct 691 AATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 632 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | ||| | || | | ||||||||||| | || ||||| Sbjct 631 AGTGATACCATCGACAATGTCAAAGCCAAGA-TCCAGGACAAAGAAGGCATCCCTCCAGA 573 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | | || ||||| ||||| ||||||||||| | | ||| | | ||||| Sbjct 572 TCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTA 513 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGT 23846 |||||| ||||| ||||| || | || | || || ||| | | |||||| | || Sbjct 512 CAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGGAAC-TATGT 454 Query 23847 TAAAGATGAA 23856 | |||||||| Sbjct 453 TCAAGATGAA 444 >seq171660 Length=1062 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || ||||| | | Sbjct 196 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 255 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | ||| || ||||| || || | || || || || Sbjct 256 GACACTATTGACAATGTCAAAGC-AAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCA 314 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || |||| || || | | || ||||| Sbjct 315 ACAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGGCGGACACTCGCTGACTACAA 374 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| |||||||||||||| | || || ||| Sbjct 375 CATCCAAAAAGAGTCCACTCTCCACTTGGTT 405 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||| | || ||||| | Sbjct 424 ATGCAGATCTTTGTTAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGTTCT 483 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || |||| | | ||||| || || |||| |||||||| Sbjct 484 GATACAATCGATAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATACCCCCAGATCA 542 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| || || || | ||||| | | ||||||||| Sbjct 543 GCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGATTACAA 602 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 603 TATCCAAAAGGAGTCTAC 620 >seq117973 Length=1091 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 477 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 536 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | ||| || ||||| || || | || ||||| || Sbjct 537 GACACTATTGACAATGTCAAGGC-AAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 595 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||| || || || |||| || || | | || ||||| Sbjct 596 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAA 655 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 656 CATTCAAAAAGAGTCCAC 673 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| | || ||||| | | Sbjct 705 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGCTCT 764 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || ||||| || || | || |||||||| Sbjct 765 GACACAATCGATAATGTCAAGGCAAAGA-TTCAGGACAAGGAGGGCATCCCCCCAGATCA 823 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| || || || | || || | | |||||||| Sbjct 824 GCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGTACACTCGCAGATTACAA 883 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||||||||| Sbjct 884 TATCCAAAAAGAGTCCAC 901 >seq520 Length=4969 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || || ||||||||||| || || | Sbjct 1818 AAGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGC 1877 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || || || ||||| | || || || Sbjct 1878 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGAAAAGGAAGGCATCCCTCCTGA 1936 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || || || |||| ||||| || | ||| || Sbjct 1937 TCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTA 1996 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 1997 CAACATCCAGAAAG 2010 >seq2159 Length=1969 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || || ||||| | || || ||||||||| | || || |||||||| || ||| ||||| Sbjct 1538 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 1479 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | | ||| | | ||||||||||| ||||| ||||| || | || |||||||| Sbjct 1478 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 1419 Query 23824 AGGTTGCGAGGAGGA 23838 |||||| | || ||| Sbjct 1418 AGGTTGAGGGGTGGA 1404 >seq150930 Length=8867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||||||||| || || || ||||| || || || || || | Sbjct 454 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 513 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || ||| ||||| || || | || || || || Sbjct 514 GACACCATTGACAACGTTAAGGC-CAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCA 572 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | || || | | |||||||| Sbjct 573 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTACAA 632 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 633 TATCCAGAAGGAGTCGACCCTCCATTTGGT 662 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || ||||| || || || || || | Sbjct 910 ATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACCATCACCCTTGAGGTGGAGTCTTCT 969 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || ||| | || ||||| || Sbjct 970 GACACCATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGTATCCCACCAGACCA 1028 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | ||||| | | |||||||| Sbjct 1029 GCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAA 1088 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || || ||||| | ||||| || Sbjct 1089 CATCCAGAAGGAATCCACCCTTCATTTGGT 1118 >seq6123 Length=1345 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || ||||| || || | || ||||| | Sbjct 983 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 1042 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| || ||||| ||| | || ||||| || Sbjct 1043 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 1102 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || || || | ||||| | | ||||||||| Sbjct 1103 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 1162 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| | |||||||| Sbjct 1163 ATTCAAAAGGAGTCCACCCTTCATTTAGT 1191 >seq58964 Length=436 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || | || || ||||| || ||| | ||||| || | | Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || ||| ||| ||||||||||| | || ||||| || Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || || |||| | || | | |||||||| Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || | ||||| || Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGT 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337141293476240