Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq155400 89.7 4e-13 seq58964 86.0 5e-12 seq59837 82.4 6e-11 >seq155400 Length=901 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || ||||||| ||| | ||| || || ||||| || |||||||| || | |||| || | Sbjct 474 CTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCA 533 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||| ||| ||||| ||| | || || || ||||| ||| || | |||||||||| Sbjct 534 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTG 593 Query 101144 TC 101145 || Sbjct 594 TC 595 >seq58964 Length=436 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| ||| || ||||| ||||| |||||||| |||| || || || || Sbjct 118 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTC 177 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | || ||||| || |||||| ||| | |||||||||||| Sbjct 178 AAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 237 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||| || || | | | || |||| | | || ||| | ||||| ||| Sbjct 238 AATCTTTGCCTTGACGTTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATGGTT 295 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||||||||||||| Sbjct 296 TTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 328 >seq59837 Length=433 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| |||||| || || || || |||||||| |||| || | ||| || Sbjct 316 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTC 257 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | || ||||| || |||||| ||| | |||||||||||| Sbjct 256 AAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 197 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| || || |||| | | || |||| | | || ||| | ||||||||| Sbjct 196 AATCTTCGCCTTGACATTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATAGTT 139 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||| ||||||||| Sbjct 138 TTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608430052020