Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq240133 104 5e-17
seq74959 100 6e-16
seq48700 100 6e-16
seq150246 98.7 2e-15
seq77563 98.7 2e-15
seq58575 98.7 2e-15
seq29488 98.7 2e-15
seq6291 98.7 2e-15
seq272371 96.9 7e-15
seq249055 96.9 7e-15
seq101363 89.7 1e-12
seq31236 89.7 1e-12
seq30200 89.7 1e-12
seq139651 84.2 5e-11
seq39502 84.2 5e-11
seq3767 84.2 5e-11
>seq240133
Length=388
Score = 104 bits (114), Expect = 5e-17
Identities = 165/233 (71%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 230398 GCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCAT 230456
|| ||||| | || | ||||||| | || ||||| | || || |||||| |||| ||
Sbjct 301 GCGGTTGACATAGAGAGGGAGTTCGTCTGCGACGCGTTACCGTG-CGCCTTGGTTGGGAT 243
Query 230457 GAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT 230516
||||| ||| || ||||| ||||||||||| ||||| || || | | | | ||| |
Sbjct 242 GAACGGTGATCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTT 183
Query 230517 TGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCT 230576
|| || | ||| |||| | ||||||| |||| | |||||||| ||| ||
Sbjct 182 GGGATATGGGAAGCTGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCT 123
Query 230577 TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628
||| ||||||||||| ||||| || ||| | || | || || ||| ||||||
Sbjct 122 TCAGGGGAAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCAGAAGGCCT 70
>seq74959
Length=549
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 156 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 215
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 216 CCCCACGGTGGGC 228
>seq48700
Length=635
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 142 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 201
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 202 CCCCACGGTGGGC 214
>seq150246
Length=1724
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 272 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 213
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 212 CCCACGGTGGGC 201
>seq77563
Length=367
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 140 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 199
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 200 CCCACGGTGGGC 211
>seq58575
Length=553
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 254 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 313
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 314 CCCACGGTGGGC 325
>seq29488
Length=302
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 164 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 105
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 104 CCCACGGTGGGC 93
>seq6291
Length=996
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 198 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 257
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 258 CCCACGGTGGGC 269
>seq272371
Length=479
Score = 96.9 bits (106), Expect = 7e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770
||||||||||||||| |||||||||| || || |||| || |||||||||||||||||||
Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60
Query 165771 CCACGATGGGC 165781
||||| |||||
Sbjct 61 CCACGGTGGGC 71
>seq249055
Length=408
Score = 96.9 bits (106), Expect = 7e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770
||||||||||||||| |||||||||| || || |||| || |||||||||||||||||||
Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60
Query 165771 CCACGATGGGC 165781
||||| |||||
Sbjct 61 CCACGGTGGGC 71
>seq101363
Length=1729
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||
Sbjct 1458 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 1399
Query 165770 CCCACGATGGGC 165781
||| || |||||
Sbjct 1398 CCCTCGGTGGGC 1387
>seq31236
Length=887
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||
Sbjct 149 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 208
Query 165770 CCCACGATGGGC 165781
||| || |||||
Sbjct 209 CCCTCGGTGGGC 220
>seq30200
Length=1990
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||
Sbjct 1765 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 1706
Query 165770 CCCACGATGGGC 165781
||| || |||||
Sbjct 1705 CCCTCGGTGGGC 1694
>seq139651
Length=1467
Score = 84.2 bits (92), Expect = 5e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
|||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||
Sbjct 61 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 2
Query 165768 G 165768
|
Sbjct 1 G 1
>seq39502
Length=1188
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||
Sbjct 1121 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 1180
Query 165770 CCCACG 165775
||| ||
Sbjct 1181 CCCTCG 1186
>seq3767
Length=323
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||
Sbjct 68 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 9
Query 165770 CCCACG 165775
||| ||
Sbjct 8 CCCTCG 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1053444052290690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |