Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq167275 141 1e-28
seq55815 131 3e-25
seq1583 131 3e-25
seq136929 109 8e-19
seq37689 104 4e-17
seq167078 102 1e-16
seq302619 98.7 1e-15
seq23575 98.7 1e-15
seq155405 91.5 2e-13
seq104817 91.5 2e-13
seq294161 86.0 9e-12
seq21874 86.0 9e-12
>seq167275
Length=2206
Score = 141 bits (156), Expect = 1e-28
Identities = 172/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596
||||||||| ||| | ||||| | ||||| |||||||| ||| | || | ||| ||
Sbjct 806 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 747
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
| || |||||| |||| | || ||| ||||| || |||||||| || || || || |
Sbjct 746 A-GACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 688
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || ||||| || ||||||||||| || | |||||| || | ||| | | |||||| |
Sbjct 687 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACA 628
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || || || || |||||| |||||||||| | ||| |||| ||||| ||
Sbjct 627 ACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 576
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || || || || ||||| | ||| | || |
Sbjct 577 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 518
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| |||| | ||| || ||||| || || || || || || || || ||
Sbjct 517 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 458
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||||| || ||||| || || || | || ||| | || || ||| |||||| |||
Sbjct 457 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTCTAGCAGATTACAAT 398
Query 124719 ATTCAAAAAGAATCAAC 124735
|||||||| || |||||
Sbjct 397 ATTCAAAAGGAGTCAAC 381
Score = 86.0 bits (94), Expect = 9e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || |||||||| ||||| || | ||| ||||| |
Sbjct 1489 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 1430
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || || || ||||| || || || || || || || ||
Sbjct 1429 GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 1370
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| || ||||| || || || | ||||| | |||||| | | || || ||
Sbjct 1369 CAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAAC 1310
Query 124719 ATTCAAAAAGAATCAAC 124735
||||||||||| || ||
Sbjct 1309 ATTCAAAAAGAGTCCAC 1293
>seq55815
Length=911
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| || || |||||||| || | | | || | ||| |
Sbjct 134 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCATTGTGGAAGTGGAAAGCTCT 193
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| |||| | ||| ||||||||||| || || ||||| || || || |||
Sbjct 194 GACACCATTGATAATGTGAAAGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 253
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||| | ||||||||||| || || | |||||| | | ||| | | || ||||||
Sbjct 254 CAAAGGTTGATTTTTGCAGGCAAGCAGCTTGAGGATGGAAGGACACTTGTTGACTATAAT 313
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || || ||| |||| || || | ||| | || ||||||||
Sbjct 314 ATTCAAAAGGAGTCCACTCTGCACTTAGTGCTTCGTCTGCGCGGTGGTAT 363
Score = 89.7 bits (98), Expect = 8e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 124635 AAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694
|| || || || || || || || || ||||| ||||||||||| ||||| ||||||||
Sbjct 2 AAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGAT 61
Query 124695 AGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754
||| || | | |||||| || || || || ||||||||| | || ||||| || |||
Sbjct 62 GGTCACACTCTTGCAGATTACAACATCCAGAAGGAATCAACTCTTCACTTGGTGTTGCGT 121
Query 124755 TTACGAGGTGGTAT 124768
| || ||||| ||
Sbjct 122 CTTCGTGGTGGCAT 135
>seq1583
Length=2309
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| || || |||||||| || ||| | || | ||| |
Sbjct 134 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 193
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || |||| | ||| |||||||| ||||| || ||||| || || || ||
Sbjct 194 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 253
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | ||||||||||| || || | |||||| | | ||| | | ||| ||||||
Sbjct 254 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 313
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || || ||| |||| ||||| | ||| | || ||||||||
Sbjct 314 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGGTAT 363
Score = 89.7 bits (98), Expect = 8e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 124635 AAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694
|| || || || || || || || || ||||| ||||||||||| ||||| ||||||||
Sbjct 2 AAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGAT 61
Query 124695 AGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754
||| || | | || || |||||||| || ||||||||| | || ||||| || |||
Sbjct 62 GGTCACACTCTTGCGGACTACAATATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGT 121
Query 124755 TTACGAGGTGGTAT 124768
| || ||||| ||
Sbjct 122 CTCCGTGGTGGCAT 135
>seq136929
Length=1332
Score = 109 bits (120), Expect = 8e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | ||||| | || ||||| || || || | ||| | || |||
Sbjct 345 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTC- 403
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | ||| || |||||||||| || ||||| || || |||||
Sbjct 404 TGATACCATTGACAATGTCAAAGCCAAGGTTCAAGATAAGGAGGGTATCCCGCCGGATCA 463
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||||| | || || || ||||| || || |||||| |||| || || | ||||||||
Sbjct 464 GCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 523
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
||| || || || || || |||| | ||| | ||| | || ||||||
Sbjct 524 TATCCAGAAGGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGTGGTGGT 572
>seq37689
Length=540
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| || || ||||| || || || | ||| ||||| |
Sbjct 375 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 316
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| |||| | ||| ||||| || || || ||||| || || || || |||
Sbjct 315 GACACCATTGATAATGTCAAAGCCAAAATCCACGACAAGGAAGGCATCCCCCCGGACCAA 256
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| |||||||| || || || | |||||| | | || | | || || |||
Sbjct 255 CAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACACACCCTTGTTGACTACAAT 196
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| ||||| ||| | || ||||| | | | || ||||||||
Sbjct 195 ATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTAT 146
>seq167078
Length=762
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686
|||| ||||| ||||| || || || ||||| || || || |||||||| || || || |
Sbjct 497 TTCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGT 556
Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746
| || ||| ||||||| | | ||||||||||||||||||||| |||||| | || | |
Sbjct 557 TGGAAGATGGTCGAACCCTTGCAGATTATAATATTCAAAAAGAGTCAACTCTCCACCTTG 616
Query 124747 TTTT 124750
||||
Sbjct 617 TTTT 620
>seq302619
Length=692
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| || || ||||| || || || | ||| ||||| |
Sbjct 102 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 161
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| ||||| |||||||| ||||| || || || || ||
Sbjct 162 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 221
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| || |||||||| ||||| || | |||||| | || || | | || || |||
Sbjct 222 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGATGGACGCACCCTTGCTGACTACAAT 281
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747
|||||||| ||||| ||| | || ||||
Sbjct 282 ATTCAAAAGGAATCGACTCTACACCTGGT 310
>seq23575
Length=1941
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/230 (70%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | ||||| | || ||||| || || || | ||| | || |||
Sbjct 1619 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 1678
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATT-CAAGATAAAGAAGGTATACCACCTGATC 124656
||||| ||| ||| | ||| || || |||||||| || ||||| || || ||||
Sbjct 1679 -GATACCATTGACAATGTCAAAGCCAAGGTTTCAAGATAAGGAGGGTATCCCGCCGGATC 1737
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| |||||| | || || || ||||| || || |||||| |||| || || | |||||||
Sbjct 1738 AGCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATA 1797
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|||| || || || || || |||| | ||| | ||| | || ||||||
Sbjct 1798 ATATCCAGAAGGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGTGGTGGT 1847
>seq155405
Length=1148
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || |||||||| || || || | ||| ||||| |
Sbjct 867 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 808
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || ||||| || || || || || || || |||
Sbjct 807 GACACTATTGACAATGTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAA 748
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| || ||||| || || || | ||||| | || ||| | | || || ||
Sbjct 747 CAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGGCGGACACTCGCTGACTACAAC 688
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| |||||||| || ||| | || ||||||
Sbjct 687 ATCCAAAAAGAGTCCACTCTCCACTTGGTT 658
>seq104817
Length=483
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686
|||| || || ||||| || || || ||||| || || || |||||||| || || || |
Sbjct 218 TTCAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGT 277
Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736
| || ||| ||||||| | | |||||||||||| |||||||| ||||||
Sbjct 278 TGGAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACT 327
>seq294161
Length=603
Score = 86.0 bits (94), Expect = 9e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || || | || || ||||| || || || || ||| | ||| | || |||
Sbjct 8 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATCACTCTCGAGGTCGAGAGCTC- 66
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| || || | || || || || || || |||||||| || || || ||
Sbjct 67 TGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCA 126
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| | || |||||||| || || | |||||| |||| || | | ||||| ||
Sbjct 127 GCAGAGGTTGATCTTTGCAGGGAAGCAGCTCGAGGATGGTCGTACCCTGGCTGATTACAA 186
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| || || || || |||||||||||||| | ||| | || ||||||
Sbjct 187 CATCCAGAAGGAGTCGACTTTGCATTTGGTCCTCCGTCTCCGGGGTGGT 235
>seq21874
Length=1446
Score = 86.0 bits (94), Expect = 9e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686
|||| ||||| ||||| || || ||||||||||| || | |||||||| || || ||||
Sbjct 1404 TTCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAAT 1345
Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746
| || ||| | |||| | | |||||| || || ||||| || |||||| | || | |
Sbjct 1344 TGGAAGATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAG 1285
Query 124747 TTTTA 124751
|||||
Sbjct 1284 TTTTA 1280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 752404307158400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |