Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq163152 104 3e-17 seq21874 104 3e-17 seq167078 100 4e-16 seq40208 95.1 2e-14 seq302619 93.3 6e-14 seq104817 91.5 2e-13 >seq163152 Length=1956 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | ||| || || || ||||| ||||| | | Sbjct 1495 CCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 1554 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || ||||| || ||||| |||||||| || ||||||||||| || Sbjct 1555 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 1614 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 1615 ATCCCTTCCTTATCCTG 1631 >seq21874 Length=1446 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || ||||| || | || | ||| || || || || || |||||| Sbjct 1263 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 1322 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 1323 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 1382 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 1383 GGGATGCCTTCCTTATCCTG 1402 >seq167078 Length=762 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || | || || || | || | ||| || ||||| |||||||||||| Sbjct 638 GTTCCTCCCCTCAACCTCAAAACAAGGTGGAGAGTTGACTCTTTTTGAATATTATAATCT 579 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || || || || ||||||||||||| ||| |||||||||||| Sbjct 578 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCCGGA 519 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 518 GGGATGCCTTCCTTATCCTG 499 >seq40208 Length=2036 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | || || || || ||||| ||||| | | Sbjct 1053 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 994 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || ||||| |||||||| || ||||| || ||||||||||| || Sbjct 993 AGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 934 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 933 ATCCCTTCCTTATCCTG 917 >seq302619 Length=692 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| | |||| |||| ||| ||||| ||| || ||||| || || | Sbjct 328 CCACCGCGGAGTCTGAGCACCAGGTGTAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 270 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | || |||||||||||||||| ||||||||| || || || Sbjct 269 AAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 210 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 209 AATGCCTTCCTTATCTTG 192 >seq104817 Length=483 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || | || || || | || | ||| || ||||| |||||||||||| Sbjct 359 GTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 300 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || || || || ||||||||||||| ||| |||||||| ||| Sbjct 299 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGA 240 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 239 GGGATGCCTTCCTTGTCCTG 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740522897224960