Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq163152 104 3e-17
seq21874 104 3e-17
seq167078 100 4e-16
seq40208 95.1 2e-14
seq302619 93.3 6e-14
seq104817 91.5 2e-13
>seq163152
Length=1956
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | |||||||| | ||| || || || ||||| ||||| | |
Sbjct 1495 CCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 1554
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| |||| ||| || ||||| || ||||| |||||||| || ||||||||||| ||
Sbjct 1555 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 1614
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||| ||
Sbjct 1615 ATCCCTTCCTTATCCTG 1631
>seq21874
Length=1446
Score = 104 bits (114), Expect = 3e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| || || ||||| || | || | ||| || || || || || ||||||
Sbjct 1263 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 1322
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| |||
Sbjct 1323 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 1382
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || ||||| ||||| ||
Sbjct 1383 GGGATGCCTTCCTTATCCTG 1402
>seq167078
Length=762
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || || | || || || | || | ||| || ||||| ||||||||||||
Sbjct 638 GTTCCTCCCCTCAACCTCAAAACAAGGTGGAGAGTTGACTCTTTTTGAATATTATAATCT 579
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||| |||| | ||| || || || || ||||||||||||| ||| ||||||||||||
Sbjct 578 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCCGGA 519
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || ||||| ||||| ||
Sbjct 518 GGGATGCCTTCCTTATCCTG 499
>seq40208
Length=2036
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | ||||| || | || || || || ||||| ||||| | |
Sbjct 1053 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 994
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| |||| ||| || ||||| |||||||| || ||||| || ||||||||||| ||
Sbjct 993 AGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 934
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||| ||
Sbjct 933 ATCCCTTCCTTATCCTG 917
>seq302619
Length=692
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | ||||| | |||| |||| ||| ||||| ||| || ||||| || || |
Sbjct 328 CCACCGCGGAGTCTGAGCACCAGGTGTAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 270
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| || | | ||| || | || |||||||||||||||| ||||||||| || || ||
Sbjct 269 AAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 210
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| ||||||||
Sbjct 209 AATGCCTTCCTTATCTTG 192
>seq104817
Length=483
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || || | || || || | || | ||| || ||||| ||||||||||||
Sbjct 359 GTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 300
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||| |||| | ||| || || || || ||||||||||||| ||| |||||||| |||
Sbjct 299 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGA 240
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || ||||| || || ||
Sbjct 239 GGGATGCCTTCCTTGTCCTG 220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740522897224960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |